View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7863_low_26 (Length: 486)
Name: NF7863_low_26
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Complemental strand, 27105557 - 27105103
Alignment:
| Q |
15 |
tggacatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctt |
114 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27105557 |
tggagatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtagctggtattagacgcaagttgaaggattttgaacctt |
27105458 |
T |
|
| Q |
115 |
tacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105457 |
tacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaat |
27105358 |
T |
|
| Q |
215 |
aagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttggagacgaattataacgaggaatccaggatgctaagtacc |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27105357 |
aagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttggagacgaattataaagaggaatccaggatgctaagtacc |
27105258 |
T |
|
| Q |
315 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105257 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccat |
27105158 |
T |
|
| Q |
415 |
gcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttga |
469 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105157 |
gcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttga |
27105103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Complemental strand, 27098558 - 27098104
Alignment:
| Q |
15 |
tggacatcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctt |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||| |||||||||||||| |||| |
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|
| T |
27098558 |
tggagatcaagagcaagagccttaaaacttaacagcaatggtgaaacagtactgaccattgtagcaggtattagacgcaacttgaaggattttgatcctt |
27098459 |
T |
|
| Q |
115 |
tacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || || |
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|
| T |
27098458 |
tacctaatggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagtgagctcgatgaaaggccactctatgaaattattaagctcat |
27098359 |
T |
|
| Q |
215 |
aagagagactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttggagacgaattataacgaggaatccaggatgctaagtacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||| |
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|
| T |
27098358 |
cagagagactaaaaacattgcttccaccactgattttgtcaaaaattcaatcaacacgttggagactaattataacgaggaatcaaggatggtaagtact |
27098259 |
T |
|
| Q |
315 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccat |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
27098258 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggaaatgtagattttggtgggaacgaagcagtgaatttagtaccagcaccat |
27098159 |
T |
|
| Q |
415 |
gcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttga |
469 |
Q |
| |
|
||||| |||||||||| || ||||| |||||||||||| |||||||||||||||| |
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|
| T |
27098158 |
gcaacatgtttgcgtcaattgaaattagcatttttacatctcctaataaatttga |
27098104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 27056721 - 27056458
Alignment:
| Q |
21 |
tcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttaccta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||||| ||| |||||| ||| ||||||||| |
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|
| T |
27056721 |
tcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgctgaccattgcagttggtattagacgcaacttggaggattatgatactttaccta |
27056622 |
T |
|
| Q |
121 |
atggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagaga |
220 |
Q |
| |
|
| || || ||||| ||||| | | |||| ||| ||| |||||||| || |||||| | |||| |||||||||||||||| |||| || || | ||| |
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|
| T |
27056621 |
aagggtaatatggaaattctactatagatgtaaatgttgttttaaaagtgagtgagctcaacgaaatgccactctatgaaattgttaagctgattaaaga |
27056522 |
T |
|
| Q |
221 |
gactaaaaacattgcttccaccactgattttatcaaaaattcaatcaacacgttggagacgaat |
284 |
Q |
| |
|
||||||||| ||||||| || |||||| | ||| ||| ||||| ||| | |||||||||||| |
|
|
| T |
27056521 |
gactaaaaatattgctttcattgctgattatgtcacaaactcaataaactctttggagacgaat |
27056458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 21 - 477
Target Start/End: Complemental strand, 27045821 - 27045359
Alignment:
| Q |
21 |
tcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttaccta |
120 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||| |||||| || || |||||||||||||| |||| | || ||| ||||| |||| |
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|
| T |
27045821 |
tcaagagcaagagccttacaacttagcaacaatggaaaaacaatgttgaatatgttagttggtattagacgcagcatgaaaggttatgatcctttgccta |
27045722 |
T |
|
| Q |
121 |
atggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagaga |
220 |
Q |
| |
|
|| |||||||| ||| | ||| |||| ||| ||||||||||||||| |||||| |||||| |||||||||||||||| |||| | || | ||| |
|
|
| T |
27045721 |
tagggtattatggtaatactactgtggatggaaaagttgtgttaaaagttagtgagctcaatgaaatgccactctatgaaattgttaagttgatcaaaga |
27045622 |
T |
|
| Q |
221 |
gactaaaaacattgcttccaccactgattttatcaaaaattcaatc---aacacgttggagacgaattataacgaggaatccaggatgctaagtaccggt |
317 |
Q |
| |
|
| ||||||| ||||||||| ||||||||| | ||||||| || ||| |||| ||||||| | |||| | || | || ||| ||| |||| |
|
|
| T |
27045621 |
ggctaaaaagattgcttcctccactgattatgtcaaaaactcgatcgatcacactccggagacggagcataagcaagattttagcatggacggtagcggt |
27045522 |
T |
|
| Q |
318 |
gcagtaacggttctgacagagtggaaacatttaggttttcttgatgga---gatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccat |
414 |
Q |
| |
|
|| |||||| ||||||| |||||||| |||||||||||| |||||| | || |||||||||| ||| ||||| |||||||||| ||||||||||||| |
|
|
| T |
27045521 |
gcggtaacgattctgactgagtggaagcatttaggttttgttgatgaaaataatatagattttggagggtatgaatcagtgaattttgtaccagcaccat |
27045422 |
T |
|
| Q |
415 |
gcaacttgtttgcgtccatggaaatgagcatttttacacctcctaataaatttgatgatgatg |
477 |
Q |
| |
|
||||| |||||||||| ||||| | ||||||| || ||||| |||| |||||||||||| |
|
|
| T |
27045421 |
gcaacatgtttgcgtctttggaagggtgcattttcgcatctcctggtaaacttgatgatgatg |
27045359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 27069830 - 27069602
Alignment:
| Q |
21 |
tcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttaccta |
120 |
Q |
| |
|
|||||||||||||||||||| |||| || ||||| | ||||| || ||| || || |||||| ||||| || |||| ||||||||| ||||||| | |
|
|
| T |
27069830 |
tcaagagcaagagccttaaagcttagcagcaatgataaaacaatgctgaatatgttagttggtatgagacgtaacttgatggattttgatactttaccga |
27069731 |
T |
|
| Q |
121 |
atggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagaga |
220 |
Q |
| |
|
| || ||||| |||||||| | |||||||| ||| |||||||| || ||||||||||||| |||||||||||||||| |||| || || | ||| |
|
|
| T |
27069730 |
aagggtattacgggaattctaccatggatgcaaaagttgttttaaaagtgagtgagctcgatgaaatgccactctatgaaattgttaagctgattaaaga |
27069631 |
T |
|
| Q |
221 |
gactaaaaacattgcttccaccactgatt |
249 |
Q |
| |
|
||||||||| ||| ||| ||||||||||| |
|
|
| T |
27069630 |
gactaaaaatatttctttcaccactgatt |
27069602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 237
Target Start/End: Complemental strand, 27085886 - 27085670
Alignment:
| Q |
21 |
tcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattgtaactggtattagacgcaagttgaaggattttgaacctttaccta |
120 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||| | | ||||||| | ||||| ||||||||| || ||||||| ||| ||||||||| |
|
|
| T |
27085886 |
tcaagagcaagagccttaaaacttaaaagcaatggtttaacagcgctaaccattgcagttggtagtagacgcaacttaaaggattatgatactttaccta |
27085787 |
T |
|
| Q |
121 |
atggttattatgggaattcatgtgttgatgcaaacactgtgttaaaagttagcgagctcgatgaaaggccactctatgaaattattaacctaataagaga |
220 |
Q |
| |
|
| || |||||||||||||| | | |||| ||| ||| |||||||| || | |||| | |||| |||||||||||||| ||||| || || | ||| |
|
|
| T |
27085786 |
aagggtattatgggaattctattatagatgtaaatgttgttttaaaagtgagtgtgctcaacgaaatgccactctatgaaaccattaagctgattaaaga |
27085687 |
T |
|
| Q |
221 |
gactaaaaacattgctt |
237 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
27085686 |
gactaaaaatattgctt |
27085670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 27041408 - 27041354
Alignment:
| Q |
21 |
tcaagagcaagagccttaaaacttaacaacaatggtgaaacagtgttgaccattg |
75 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27041408 |
tcaagagcaagagccttaaaacttaacagcaatggtgaaacagtgttgaccattg |
27041354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 418
Target Start/End: Complemental strand, 27069530 - 27069430
Alignment:
| Q |
315 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttcttgatggagatgtagattttggtgggcatgaagcagtgaatttagtaccagcaccat |
414 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||| ||||||| ||| | || |||||||||| || |||||| |||||||||||||||||||| | |
|
|
| T |
27069530 |
ggtgcagtaacagttttgacagagtggaagcatttgggttttc---atgaaaatatagattttggaggctatgaagttgtgaatttagtaccagcaccgt |
27069434 |
T |
|
| Q |
415 |
gcaa |
418 |
Q |
| |
|
|||| |
|
|
| T |
27069433 |
gcaa |
27069430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 357
Target Start/End: Complemental strand, 27062463 - 27062421
Alignment:
| Q |
315 |
ggtgcagtaacggttctgacagagtggaaacatttaggttttc |
357 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
27062463 |
ggtgcagtaacggttctaacagagtggaaacatttgggttttc |
27062421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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