View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_33 (Length: 455)
Name: NF7863_low_33
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Original strand, 26853102 - 26853536
Alignment:
| Q |
15 |
gacatcaaggtcttatcttggagatggcatttggaccggtccaattctccggcttgtatgttctatgaatggcattggaacccaaaggagtgtctgttgc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26853102 |
gacatcaaggtcttatcttggagatggcatttggaccggtccaattctccggcttgtatgttctatgaatggcattggaacccaaaggagtgtctgttgc |
26853201 |
T |
|
| Q |
115 |
ggaaaagggtgtcatttctgtttgcagtgcgaggttgaggctgaggtatacggtgtctgcagctgtagaatgctgtcagtacgcatatagcagcatcaat |
214 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26853202 |
ggtaaagggtgtcatttctgtttgcattgcgaggttgaggctgaggtatacggtgtctgcagctgtagaatgctgtcagtacgcatatagcagcatcaat |
26853301 |
T |
|
| Q |
215 |
tttctgtgtttttgcaacagggtgctgcggctgggtttcctgctgtcatagcag------------nnnnnnnctgttttggggtttgttttccggtatg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26853302 |
tttctgtgtttttgcaacagggtgctgcggctgggtttcctgctgtcatagcagtttttttctgttttgggatctgttttggggtttgttttccggtatg |
26853401 |
T |
|
| Q |
303 |
tcggagacaattgtatatgtttgcctcttgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgattt-nnnnnnnngataaggaag |
401 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26853402 |
tcggagacaattgtatatgtttgcctctcgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgatttcaaaaaaaagataaggaag |
26853501 |
T |
|
| Q |
402 |
tgatgtttctaacttctcttcttcgatctccctat |
436 |
Q |
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| T |
26853502 |
tgatgtttctaacttctcttcttcaatctccctat |
26853536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 34 - 268
Target Start/End: Original strand, 10509314 - 10509554
Alignment:
| Q |
34 |
ggagatggcatttggaccggtccaattctccggcttgtatgttctatgaatggcattggaacccaaaggagtgtctgttgcggaaaagggtgtcatttct |
133 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| || | ||||| |||| |
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| T |
10509314 |
ggagatggcagttggaccggtccaattctccggcttgtatgttctatgaatggcattggaatccaaaggactgtttgttgcggtaatagttgtcacttct |
10509413 |
T |
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| Q |
134 |
gtttgcagtgcgaggttgaggctgaggtatacggtgtctgcagc------tgtagaatgctgtcagtacgcatatagcagcatcaattttctgtgttttt |
227 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||| |||||||| || | |
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| T |
10509414 |
gtttgcattgcgaggttgaggctgaggtatacggtgtccgcagctgccattgttgactgctgtcagtacgcatatagcagcatcaggtttctgtgcttct |
10509513 |
T |
|
| Q |
228 |
gcaacagggtgctgcggctgggtttcctgctgtcatagcag |
268 |
Q |
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|| ||||||||||| ||||| | || ||||||||||||||| |
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| T |
10509514 |
gctacagggtgctgtggctgagatttctgctgtcatagcag |
10509554 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 169
Target Start/End: Original strand, 7306770 - 7306907
Alignment:
| Q |
33 |
tggagatggcatttggaccggtccaattctccggcttgtatgttctatgaatggcattggaacccaaaggagtgtctgttgcggaaaagggtgtcatttc |
132 |
Q |
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|||||||||||| |||| || |||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||| || || | ||| ||| |
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| T |
7306770 |
tggagatggcatatggatcgttccaattctcaggcttgtatgtattatgaatggcattggaatccaaaggagtgtatgttgcgttaatggttttcacttc |
7306869 |
T |
|
| Q |
133 |
tgtt-tgcagtgcgaggttgaggctgaggtatacggtg |
169 |
Q |
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|||| |||| ||||||| ||| |||||||||||||||| |
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| T |
7306870 |
tgttctgcattgcgaggctgacgctgaggtatacggtg |
7306907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 355
Target Start/End: Complemental strand, 33580430 - 33580363
Alignment:
| Q |
288 |
ttgttttccggtatgtcggagacaattgtatatgtttgcctcttgagtttgttgtgcgtcctgtacac |
355 |
Q |
| |
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||||||||||||||||||||||| |||||| |||| |||| ||||||||||||| || ||||||| |
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| T |
33580430 |
ttgttttccggtatgtcggagacgcttgtatttgttatgctctcgagtttgttgtgcttcttgtacac |
33580363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 288 - 383
Target Start/End: Complemental strand, 35025239 - 35025144
Alignment:
| Q |
288 |
ttgttttccggtatgtcggagacaattgtatatgtttgcctcttgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgattt |
383 |
Q |
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|||||||||||||||||||||||| |||||| |||| |||| |||||||||||||| | |||||||||||||| |||||||| ||||||||||| |
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| T |
35025239 |
ttgttttccggtatgtcggagacatttgtatttgttatgctctcgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt |
35025144 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 16666769 - 16666865
Alignment:
| Q |
288 |
ttgttttccggtatgtcggagacaattgtat--atgtttgcctcttgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgattt |
383 |
Q |
| |
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||||||||||||||||| ||||||||||||| |||||| || | |||||| |||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
16666769 |
ttgttttccggtatgtcagagacaattgtatttatgttttccccca-agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt |
16666865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 17641139 - 17641235
Alignment:
| Q |
288 |
ttgttttccggtatgtcggagacaattgtat--atgtttgcctcttgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgattt |
383 |
Q |
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||||||||||||||||| ||||||||||||| |||||| || | |||||| |||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
17641139 |
ttgttttccggtatgtcagagacaattgtatttatgttttccccca-agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt |
17641235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 26697831 - 26697778
Alignment:
| Q |
63 |
ccggcttgtatgttctatgaatggcattggaacccaaaggagtgtctgttgcgg |
116 |
Q |
| |
|
||||||||| |||| || |||||| ||||||||||||| |||||||| |||||| |
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|
| T |
26697831 |
ccggcttgtttgttttacgaatggaattggaacccaaaagagtgtcttttgcgg |
26697778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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