View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_36 (Length: 445)
Name: NF7863_low_36
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_36 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 23 - 418
Target Start/End: Original strand, 12551092 - 12551487
Alignment:
| Q |
23 |
agactagtctaaaaccattatataatatagttgatgatcgtgatcgcaaaacaacaaaggtcttgatgttataatttagatcgttgtcacaaacttttat |
122 |
Q |
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| T |
12551092 |
agactagtctaaaaccattatataatatagttgatgatcgtgatcgcaaaacaacaaagatcttgatgttataatttagatcgttgtcacaaacttttat |
12551191 |
T |
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| Q |
123 |
ttaaaatctaacactaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataattaaattctgcgtcacaccct |
222 |
Q |
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| T |
12551192 |
ttaaaatctaacactaaactaattgaacaaccaacattatttcagagttagaaatcaatttagttttcctgtttcataattaaattctgcgtcacaccct |
12551291 |
T |
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| Q |
223 |
gcaacatcctacgtacgtttgttcacttcatgggcatgcagttttgtttttgctactctcataatcatgcatgtcttgattgtatcgaaaatcttcaaat |
322 |
Q |
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| T |
12551292 |
gcaacatcctacgtacgtttgttcacttcatgggcatgcagttttgtttttgctactctcataatcatgcatgtcttgattgtatcgaaaatcttcaaat |
12551391 |
T |
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| Q |
323 |
aatgttgaggaaaacattattggtcaaagtcacaatatattaattaactataatgaaattcaaactagtactttaagcctttcaaaccatatatgc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12551392 |
aatgttgaggaaaacattattggtcaaagtcacaatatattaattaactataatgaaattcaaactagtactttaagcctttcaaaccatatatgc |
12551487 |
T |
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