View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_38 (Length: 438)
Name: NF7863_low_38
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 41621878 - 41621453
Alignment:
| Q |
1 |
tcatttgtcctagtgagaatggatatgagaacaattggcacttattcatcagatccaatgtccaaaaagtattgagagttggatcaaaagcaaattgtgg |
100 |
Q |
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| T |
41621878 |
tcatttgtcctagtgagaatggatatgagaacaattggcacttattcatcagatccaatgtctaaaaagtattgagagttggatcaaaagcaaattgtgg |
41621779 |
T |
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| Q |
101 |
gacaagatggaaccattactgatcaggtgcaacagtttcaaagagctagtttttc-gttgtttacaaaactggaacagcatagcagaactcattttgcaa |
199 |
Q |
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| T |
41621778 |
gacaagatggaaccattactgatcaggtgcaacagtttcaaagagctagtttttctgttgtttacaaaactgaaacaggatagcagaactcattttgcaa |
41621679 |
T |
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| Q |
200 |
tggttagctatagcatttggtgcagcaggaaccttaaactctggcagggcacggtggaccatgatgatcagattatgagaagcgctgtagcagattggac |
299 |
Q |
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| T |
41621678 |
tggttagctatagcatttggcgcagcaggaaccttaaactatggcagggcacggtggaccatgatgatcagattatgagaagtgctgtagcagattggac |
41621579 |
T |
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| Q |
300 |
aggctggaacaaaggcaaaaacagaaggcaatgttgcagctctaagcaggcatatcacaaatgacagaatgcagaccacacattggtcgaagccactggc |
399 |
Q |
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| T |
41621578 |
aggctggaacaaaggcaaaaacagaaggcaatgttgcagctctaagcaggcatatcacaaatgacagaatgcagaccacacattggtcgaagccactagc |
41621479 |
T |
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| Q |
400 |
aggtttgtgaaatgcaatactgatgt |
425 |
Q |
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| T |
41621478 |
aggtttgtgaaatgcaatactgatgt |
41621453 |
T |
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