View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7863_low_42 (Length: 419)
Name: NF7863_low_42
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_42 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 39476652 - 39476940
Alignment:
| Q |
19 |
attggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476652 |
attggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggtaggcctaactatcttgtaactgccgataaaattgag |
39476751 |
T |
|
| Q |
119 |
cgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476752 |
cgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatctt |
39476851 |
T |
|
| Q |
219 |
cttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtatataaggttggagggtattgg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476852 |
cttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtatataaggttggagggtattgg |
39476940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 39484403 - 39484782
Alignment:
| Q |
19 |
attggtgtgtgagctgaagataggtgtg--gatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattg |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||| || || ||||||||||||||| ||||||| ||||| | ||||||||||||||| |||||| || |||| |
|
|
| T |
39484403 |
attggtgtgtgagctgcagataggtgtgtggagattgcattggattataggatggagtttagtggtgagtctaactatcttgtaagtgccgacaagattg |
39484502 |
T |
|
| Q |
117 |
agcgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatc |
216 |
Q |
| |
|
|| ||| |||||||||||||||| ||||||||| ||| || | ||||||||||||| | |||||||| ||||||| ||||||||||||||| |||||||| |
|
|
| T |
39484503 |
agagagtaataaggagtgtgttgtataaggatggagaggttaagaagaaagtgaaaaaaatgagtgagaagagtaggaagactttgttagagggtggatc |
39484602 |
T |
|
| Q |
217 |
ttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtatataaggttggagggtattggtttaatttt |
316 |
Q |
| |
|
||| |||| ||||||||||| | ||||||||||||||||| || |||||| |||||||||||| | |||| |||||||| |||||||||||||||||||| |
|
|
| T |
39484603 |
ttcctacacttatttaggtcatctgattgattatattatgaatcaggtatcaaattaaattattcgagtaaataaggtttgagggtattggtttaatttt |
39484702 |
T |
|
| Q |
317 |
caacactaatctatataatataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgttcctactagtgat |
402 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
39484703 |
caacactaatc-----aatataataaggattagccaatttcacttggctgaaagtc-tgttcatttcagctgttcctactagtgat |
39484782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 39473170 - 39473420
Alignment:
| Q |
19 |
attggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgag |
118 |
Q |
| |
|
||||||||||||| |||| ||||| || || || | ||||||||||||| |||||| | ||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
39473170 |
attggtgtgtgagttgaaaataggagttgaaatttcgttggattatagggcggagtttaatggtgcgcctaactatcttgtaactgccgataagattgag |
39473269 |
T |
|
| Q |
119 |
cgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
39473270 |
agaggaataaggagtgtgttggataaggatggagatgtaaggaagaaagtgaaagagatgagtgaaaaaagtaagaagactttgttagaaggtggatctt |
39473369 |
T |
|
| Q |
219 |
cttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaa |
269 |
Q |
| |
|
||||| ||||||||||| ||| |||||||||||||| || ||||||||| |
|
|
| T |
39473370 |
cttacgcatatttaggtcgattggttgattatattatgaatcaggtatgaa |
39473420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 280
Target Start/End: Original strand, 39487605 - 39487866
Alignment:
| Q |
19 |
attggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgag |
118 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| || || |||||||||| ||||| ||| | || |||||||||||||||||||||| ||||| |||||| |
|
|
| T |
39487605 |
attggtgtgtgaactgaaaataggtgtggaaattgctttggattataaggtggggtttaatgaagggcctaactatcttgtaactgcggataagattgag |
39487704 |
T |
|
| Q |
119 |
cgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatctt |
218 |
Q |
| |
|
|||||||||||| | ||||||||||||||| ||| | ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39487705 |
agaggaataaggaatttgttggataaggatggagaattcaggaaaaaagtgatagagatgagtgaaaagagtaagaagactttgttagagggtggatctt |
39487804 |
T |
|
| Q |
219 |
cttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatc |
280 |
Q |
| |
|
| |||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
39487805 |
cctacacttatttaggtcatttgattgattatattatgaatcaggtatcaaattaaattatc |
39487866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 273
Target Start/End: Complemental strand, 39463588 - 39463336
Alignment:
| Q |
21 |
tggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgagcg |
120 |
Q |
| |
|
||||||||||| | ||||| | ||||| || |||||||||| || |||||||| |||| ||||||||||||||||||||| ||||| |||||| | |
|
|
| T |
39463588 |
tggtgtgtgagttaaagatggcggtggagatttcattggattacagagtggagtttcttggcgagcctaactatcttgtaactgctgataagattgagag |
39463489 |
T |
|
| Q |
121 |
aggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatcttct |
220 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |
|
|
| T |
39463488 |
aggaataaggagtgtgttagataaggatggagaagtaaggaagaaagtgaaagagatgagtgaaaaaagtaagaagactttgttagagggaggatcttcc |
39463389 |
T |
|
| Q |
221 |
tacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaatta |
273 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
39463388 |
tacacttatttaggtcgtttgattgattatattattgatgaggtatgagatta |
39463336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 39457328 - 39457068
Alignment:
| Q |
19 |
attggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgag |
118 |
Q |
| |
|
|||||| |||||||||||||| | |||||| || ||||| ||||||||| | ||||| | |||| | ||||||||||| |||||||||| || |||||| |
|
|
| T |
39457328 |
attggtatgtgagctgaagatggctgtggagattgcattagattataggttagagtttaatggcgagtctaactatcttttaactgccgacaagattgag |
39457229 |
T |
|
| Q |
119 |
cgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatctt |
218 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||| ||||||| || ||||||| |
|
|
| T |
39457228 |
agaggaataaagagtgtgttggataaggatggagaggtaaggaagaaagtgaaagagatgagtgcagcaagtaagaagactctgttagatggaggatctt |
39457129 |
T |
|
| Q |
219 |
cttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattat |
279 |
Q |
| |
|
| |||| |||||||||||||||||| |||||||||| |||| |||||| ||| |||||||| |
|
|
| T |
39457128 |
cctacacttatttaggtcgtttgatcgattatattaggtatcaggtatcaaaataaattat |
39457068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 287
Target Start/End: Original strand, 39455768 - 39456036
Alignment:
| Q |
19 |
attggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgag |
118 |
Q |
| |
|
||||||||||||||||||||| | |||||| || || | |||||||||||||||| ||| | |||||||||||||| ||||| | || || |||||| |
|
|
| T |
39455768 |
attggtgtgtgagctgaagattgctgtggagattgcgctagattatagggtggagtatagtagtgggcctaactatcttttaacttcggacaagattgag |
39455867 |
T |
|
| Q |
119 |
cgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatctt |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||| | ||||| | |||||||||||||||||||||||| ||||||||||||||||| || ||||||| |
|
|
| T |
39455868 |
agaggaataaggagtgtattggataaggatggagagtttaggaaaacagtgaaagagatgagtgaaaagagcaagaagactttgttagagggaggatctt |
39455967 |
T |
|
| Q |
219 |
cttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtat |
287 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||||| | |||||| |||||||||| ||| ||||| |
|
|
| T |
39455968 |
cttccacttatttaggtcgtttaattgattatattatgaaccaggtatcaaattaaattgtccaagtat |
39456036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 290 - 402
Target Start/End: Original strand, 39476957 - 39477069
Alignment:
| Q |
290 |
aaggttggagggtattggtttaattttcaacactaatctatataatataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgt |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39476957 |
aaggttggagggtattggtttaattttcaacactaatctatataatataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgt |
39477056 |
T |
|
| Q |
390 |
tcctactagtgat |
402 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39477057 |
tcctactagtgat |
39477069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 39452140 - 39452407
Alignment:
| Q |
19 |
attggtgtgtgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgag |
118 |
Q |
| |
|
||||||||||||| ||||||| ||||| || || || ||||||||||||||||| | | | |||||||||||| | ||||| || || |||||| |
|
|
| T |
39452140 |
attggtgtgtgagttgaagatttccgtggagattgcgttagattatagggtggagtttaacagtggtcctaactatcttttgactgctgacaagattgag |
39452239 |
T |
|
| Q |
119 |
cgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatctt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
39452240 |
aaaggaataaggagtgtgttggataaggatggagagttcaggaaaaaaatgaaagagatgagtgaaaagagtaagaagactctgttagaaggaggatctt |
39452339 |
T |
|
| Q |
219 |
cttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagta |
286 |
Q |
| |
|
| | || ||||||| ||||||| ||||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
39452340 |
cctccatttatttaagtcgtttaattgattatattatgaaccaggtatgaaattaaactatcctagta |
39452407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 28 - 287
Target Start/End: Original strand, 39461402 - 39461660
Alignment:
| Q |
28 |
tgagctgaagataggtgtggatatcgcattggattatagggtggagttaagtggcaggcctaactatcttgtaactgccgataaaattgagcgaggaata |
127 |
Q |
| |
|
|||||||||||| | |||||| || | || |||||||| |||||||| | ||| ||||||||||||||||||||| || || |||||| |||||||| |
|
|
| T |
39461402 |
tgagctgaagatggctgtggagattgtgttagattatagagtggagttcaatggtgagcctaactatcttgtaactgctgacaagattgagagaggaata |
39461501 |
T |
|
| Q |
128 |
aggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatcttcttacaatt |
227 |
Q |
| |
|
|||| ||||||||| ||||||| ||| || || ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| | |
|
|
| T |
39461502 |
aggaatgtgttggaaaaggatggagaggtcagaaagaaagtgaaagagatgagtgaaaagagtaggaaaactttgttagagggtggatcttcttacagtc |
39461601 |
T |
|
| Q |
228 |
atttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtat |
287 |
Q |
| |
|
||||||||||||| || |||| |||| || || | |||| || |||||||||||||||| |
|
|
| T |
39461602 |
atttaggtcgtttaatagattttattgtgaatcaaatatg-aactaaattatcctagtat |
39461660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 121 - 273
Target Start/End: Complemental strand, 43311461 - 43311309
Alignment:
| Q |
121 |
aggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaagagtaagaagactttgttagaaggtggatcttct |
220 |
Q |
| |
|
||||||||||||||||||||| | |||| ||| |||||||||||||||||||||||||||||| | ||| |||||| |||||||| ||||||||||| |
|
|
| T |
43311461 |
aggaataaggagtgtgttggaaacagatggagaggtaaggaagaaagtgaaagagatgagtgaacattgtaggaagacattgttagagggtggatcttcc |
43311362 |
T |
|
| Q |
221 |
tacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaatta |
273 |
Q |
| |
|
|||| || |||||| |||||||||||||||||||| || | ||||||||||| |
|
|
| T |
43311361 |
tacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
43311309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 87 - 199
Target Start/End: Complemental strand, 39452943 - 39452831
Alignment:
| Q |
87 |
ctaactatcttgtaactgccgataaaattgagcgaggaataaggagtgtgttggataaggatgcagatgtaaggaagaaagtgaaagagatgagtgaaaa |
186 |
Q |
| |
|
|||||| |||| ||||||| || ||||||||| ||||||||| |||||||||| ||||||||| ||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
39452943 |
ctaactctcttttaactgcggacaaaattgagagaggaataaagagtgtgttgtataaggatggagaggtaagaaagaaagtgcaagagataagtgaaac |
39452844 |
T |
|
| Q |
187 |
gagtaagaagact |
199 |
Q |
| |
|
||||||||||| |
|
|
| T |
39452843 |
atgtaagaagact |
39452831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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