View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_43 (Length: 415)
Name: NF7863_low_43
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 187 - 399
Target Start/End: Complemental strand, 41755511 - 41755305
Alignment:
| Q |
187 |
aaggataattgattttcttaacaagcgttattgatagtactttcttcgtatagtattaaatcatttcattattccatattcataatttcatatggaccaa |
286 |
Q |
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| T |
41755511 |
aaggataattgattttcttaacaagcgttattgatactactttcttcgtatagtattaaatcatttcattattccatattcataatttcatatggaccaa |
41755412 |
T |
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| Q |
287 |
taaataggacatttgtacttttgaataaaccaataaataggacgtataaatgatttattttatatattaatattaaagagattgggctgtcaatatttat |
386 |
Q |
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| T |
41755411 |
taaataggacatttgtacttttgaataaaccaataaataggacgtataaatgatttattttatata------ttaaagagatggggctgtcaatatttat |
41755318 |
T |
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| Q |
387 |
tgatagtcaatac |
399 |
Q |
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||||||||||||| |
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| T |
41755317 |
tgatagtcaatac |
41755305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 29 - 169
Target Start/End: Complemental strand, 41755632 - 41755493
Alignment:
| Q |
29 |
ggtaccgttgaagattttggtaccgcaaaaggacagcacaattgacaaaactcatccgacatcggctgactaattcagcccataaataatttggtaaatg |
128 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41755632 |
ggtaccgttgaagattttggtaccgcaaaaggatagcacaattgacaaaactcatccgacatcggctgactaattcagcccataaataatttggtaaatg |
41755533 |
T |
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| Q |
129 |
ttaaaaatattaaatacggtataaggataattgattttctt |
169 |
Q |
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| T |
41755532 |
tt-aaaatattaaatacggtataaggataattgattttctt |
41755493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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