View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7863_low_44 (Length: 399)
Name: NF7863_low_44
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 167 - 381
Target Start/End: Original strand, 52875287 - 52875501
Alignment:
| Q |
167 |
ttgctcaaggtattgattccttatcatcgtctatgatcaaattgatgtaacaataaaaactataaatgtataattctaaatcaataaacatagagacata |
266 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52875287 |
ttgctcaaggtattgattccttatcattgtctatgatcaaattgatgtaacgataaaaactataagtgtataattctaaatcaataaacatagagacata |
52875386 |
T |
|
| Q |
267 |
catcattcaaattatattacatcgattctgttggatttcaaaactattggtgtatgtttgagaatatgtttttgggtcttgaaagactttaagagcacaa |
366 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52875387 |
caccattcaaattatattacatcgattctgttggatttcaaaactattggtgtatgtttgagaatatgttcttgggtcttgaaagactttaagagcacaa |
52875486 |
T |
|
| Q |
367 |
ataaatatttatacc |
381 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
52875487 |
ataaatatttatacc |
52875501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 52875125 - 52875171
Alignment:
| Q |
15 |
ttggtggtgttgaggtaaggtagctttatttcattgattttatcccc |
61 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52875125 |
ttggtggtgttgaggtaaggtagctttatttcattgattttatcccc |
52875171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University