View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_47 (Length: 394)
Name: NF7863_low_47
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 7 - 376
Target Start/End: Original strand, 47058793 - 47059162
Alignment:
| Q |
7 |
ttttatgaatgtgaattacagatacttggttttgggggaagcatgttttcatttaggcctattagaccatgcaacaattcttctccaaaccggaaaaagc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47058793 |
ttttatgaatgtgaattacagatacttggttttgggggaagcatgttttcatttaggcctattagaccatgcaacaattcttctccaaaccggaaaaagc |
47058892 |
T |
|
| Q |
107 |
ctagcaagaactgcattccgctgcaagagctcatcttggtctgatgatcgcttctctgaatgtaacatatcgttctccgacggcaccatttcaagaccac |
206 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47058893 |
ctagcaagaactgcattccgctgcaggagctcatcttggtctgatgatcgcttctctgaatgtaacatatcgttctccgacggcaccatttcaagaccac |
47058992 |
T |
|
| Q |
207 |
caacaaccaaaccatatcggaaccctatttcaaggccgccaaaaaccaacccatctcaaagcactcaaactaaatatgaaactataaaccaactccttgc |
306 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47058993 |
caacaaccaaaccatatcggagccctatttcaaggccgccaacaaccaacccatctcgaagcactcaaactaaatatgaaactataaaccaactccttgc |
47059092 |
T |
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| Q |
307 |
aaagacaaaattccatctctgtcgtcacaccactgcaatcactgcctttgaagctggattttacacagaa |
376 |
Q |
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| T |
47059093 |
aaagacaaaactccatctcagtcatcgcaccactgcaatcactgcctttgaagctggattttacacagaa |
47059162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 14 - 211
Target Start/End: Complemental strand, 26976524 - 26976328
Alignment:
| Q |
14 |
aatgtgaattacagatacttggttttgggggaagcatgttttcatttaggcctattagaccatgcaacaattcttctccaaaccggaaaaagcctagcaa |
113 |
Q |
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| T |
26976524 |
aatgtggattacagatacttggttttggggaaaacatgtttccatttaggcctactggacaatgcagtggctattctccagatgtgaaaaagcctcgcca |
26976425 |
T |
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| Q |
114 |
gaactgcattccgctgcaagagctcatcttggtctgatgatcgcttctctgaatgtaacatatcgttctccgacggcaccatttcaagaccaccaaca |
211 |
Q |
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| T |
26976424 |
tagctccattccgctgcaaaggctcgtcttgg-ctgatgattgtttccctgaatgtaacatattgttctccgacgacaccatttcaaggccaccaaca |
26976328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 26922347 - 26922221
Alignment:
| Q |
10 |
tatgaatgtgaattacagatacttggttttgggggaagcatgttttcatttaggcctattagaccatgcaacaattcttctccaaaccggaaaaagccta |
109 |
Q |
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| T |
26922347 |
tatgaatgtgaattacacatacttggttttagggaaaacatgtttccatttagacccactagaccctgcaatggttcttctccaaaccggaaaaagcatc |
26922248 |
T |
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| Q |
110 |
gcaagaactgcattccgctgcaagagc |
136 |
Q |
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| T |
26922247 |
gctagagctgcattccgttgcaagagc |
26922221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 26976005 - 26976072
Alignment:
| Q |
11 |
atgaatgtgaattacagatacttg-gttttgggggaagcatgttttcatttaggcctattagaccatg |
77 |
Q |
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|||||||||||||||| |||||| |||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
26976005 |
atgaatgtgaattacaaatacttacgttttgggggaaaaatgttttcatttaggcctaatggaccatg |
26976072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 26921815 - 26921871
Alignment:
| Q |
11 |
atgaatgtgaattacagatacttggttttgggggaagcatgttttcatttaggccta |
67 |
Q |
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|||||||||||||||| ||| |||||||||||| || |||||| |||||||||||| |
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| T |
26921815 |
atgaatgtgaattacatatatttggttttggggaaaagatgtttccatttaggccta |
26921871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 39109544 - 39109597
Alignment:
| Q |
14 |
aatgtgaattacagatacttggttttgggggaagcatgttttcatttaggccta |
67 |
Q |
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||||| |||| |||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
39109544 |
aatgtaaatttcagatacttggttttgggcaaagcatgttgtcacttaggccta |
39109597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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