View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_55 (Length: 376)
Name: NF7863_low_55
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 15 - 358
Target Start/End: Complemental strand, 29266293 - 29265953
Alignment:
| Q |
15 |
agaagggaacattgcatatcaatatgtcactattttaaagattaacccaaatgttgttggttgaagtgtatcacatcacctctctttttattcttagcac |
114 |
Q |
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| T |
29266293 |
agaagggaacattgcatatcaatatgtcactattttaaagattaacccaaatgttg---gttgaagtgtatcacatcacctctctttttattcttagcac |
29266197 |
T |
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| Q |
115 |
tcattttagactattagaacaattttcttaatactactcaattttgtaaagtattctaataatcctaatgaaatcaagaacacaaactaattaaatgggc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29266196 |
tcattttagactattagaacaattttcttaatactactcaattttgtaaagtattctaataatcctaatgaaatcaagaacacaaactaattaaatgggc |
29266097 |
T |
|
| Q |
215 |
ccaccaaaccatatcactttgaaacaacaacatgaaccaccactgtctttctttctttctcactttgcctcttcaagttcaactcaagtatttagtttca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29266096 |
ccaccaaaccatatcactttgaaacaacaacatgaaccaccactgtctttctttctttctcactttgcctcttcaagttcaactcaagtatttagtttca |
29265997 |
T |
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| Q |
315 |
tctttccattttcattctcccctcatgttcttccttcacacata |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29265996 |
tctttccattttcattctcccctcatgttcttccttcacacata |
29265953 |
T |
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