View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_58 (Length: 361)
Name: NF7863_low_58
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_58 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 2 - 361
Target Start/End: Original strand, 52874789 - 52875148
Alignment:
| Q |
2 |
cattgcaatcagctaactattaggccttagactagagttattattcaccaagcaagtcttattctcatcttgtgttcacctagtttaatgattgcaagtt |
101 |
Q |
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| T |
52874789 |
cattgcaatcagctaactattaggtcttatactagagttattattcaccaagcaagtcttattctcatcttgtgttcacctagtttaatgattgcaagtt |
52874888 |
T |
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| Q |
102 |
tatttagttattttactactgaatcttaaaggatgttagtttatatatgtgtgtttcttttttattttagggatcttccccggctgaaagagtgacaaat |
201 |
Q |
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| T |
52874889 |
tatttagttattttactactgaatcttaaaggatgttagtttatatatgtgtgtttcttttttattttagggatcttccactgctgaaagagtgacaaat |
52874988 |
T |
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| Q |
202 |
gattctgaaaacgaaattgttaacatagatacaaagggggctatcatctttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcat |
301 |
Q |
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| T |
52874989 |
gattctgaaaacgaaattgttaacatagatacaaagggggctatcatctttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcat |
52875088 |
T |
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| Q |
302 |
cttggtttatctggatattgattgtacttttctgcattggtggtgttgaggtaaggtagc |
361 |
Q |
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| T |
52875089 |
cttggtttatctggatattgattgtacttttctgcattggtggtgttgaggtaaggtagc |
52875148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 250 - 355
Target Start/End: Complemental strand, 257126 - 257021
Alignment:
| Q |
250 |
tttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcatcttggtttatctggatattgattgtacttttctgcattggtggtgttg |
349 |
Q |
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| T |
257126 |
tttgtcataacagcatctacctttcttgttctgttgttcttcttcatgtcatcttggtttatgtggttgctcattgtacttttctgcattgctggtattg |
257027 |
T |
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| Q |
350 |
aggtaa |
355 |
Q |
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| T |
257026 |
aggtaa |
257021 |
T |
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