View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_62 (Length: 355)
Name: NF7863_low_62
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 34957905 - 34957604
Alignment:
| Q |
20 |
acctgaaacatttggatctatgg-aaatttagattaagaattcaaccatgcttaaaaccatgaatatataacttgcatctgaatatatatgattaaataa |
118 |
Q |
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| T |
34957905 |
acctgaaacatttggatctatgggaaatttagattaagaattcaaccatgcttaaaaccatgaatatataacttgcatctgaa------------aagaa |
34957818 |
T |
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| Q |
119 |
ttgataagaataaattaagaaagaaaaaggacaagaaattaatggattaactaaagaatttccttcatctcnnnnnnnnnnnnncttgaagaatttcctt |
218 |
Q |
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| T |
34957817 |
t--------ataaattaagaaagaaaaagggcaagaaattaatggattaactgaagaatttccttcatctcaaaaaagaaaaaacttgaagaatttcctt |
34957726 |
T |
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| Q |
219 |
ggtaagtgcaatagggctaaaaaataggctaaaaatatgaacttacatgaatgatgtcactctttttcatccacttaaaagcatttgctatatgtgaaga |
318 |
Q |
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| T |
34957725 |
ggtaagtgcaatagggctaaaaaataggctaaaaatatgaacttacatgaatgatgtcactctttttcatccacttaaaagcatttgctatatgtgaaga |
34957626 |
T |
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| Q |
319 |
attttcttgagtttgttgatgt |
340 |
Q |
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| T |
34957625 |
attttcttgagtttgttgatgt |
34957604 |
T |
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