View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_67 (Length: 343)
Name: NF7863_low_67
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_67 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 66 - 330
Target Start/End: Complemental strand, 46699511 - 46699244
Alignment:
| Q |
66 |
aaaatgtcagattcagagtcaaattcagatgttttcagtgttcgaattgtctccatagaccattacatggcatcgccaatcccatccatcaatatctctc |
165 |
Q |
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| T |
46699511 |
aaaatgtcagattcagagtcaaattcagatgttttcagtgttcgaattgtctccgtagaccattacatggcatcgccaatcccatccatcgatatctctc |
46699412 |
T |
|
| Q |
166 |
acagcaccttccatcgtatgtttcacactaaaccctaattctttacactaaactctccattttgcgtttacaatattcacaaccctaacta---nnnnnn |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699411 |
acagcaccttccatcgtatgtttcacactaaaccctaattctttacactaaactctccattttgcgtttacaatattcacaaccctaactattttttttt |
46699312 |
T |
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| Q |
263 |
nattcatactaactcaggtggaaaagtgaacgaagttcctgtaattagagtttatggttctactcctg |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699311 |
tattcatactaactcaggtggaaaagtgaacgaagttcctgtaattagagtttatggttctactcctg |
46699244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 177
Target Start/End: Original strand, 28848262 - 28848379
Alignment:
| Q |
56 |
aagaaagcaaaaaatgtcagattcagagtcaaattcagatgttttcagtgttcgaattgtctccatagaccattacatggcatcgccaatcccatccatc |
155 |
Q |
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||||||||||||||||||||||||| | | |||||||| ||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| |
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| T |
28848262 |
aagaaagcaaaaaatgtcagattcacaattaaattcagtggttttcaatgttcgaa----ctccatagaccattacatggtgctgccaaccccatccatt |
28848357 |
T |
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| Q |
156 |
aatatctctcacagcaccttcc |
177 |
Q |
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|| ||||| |||||| ||||| |
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| T |
28848358 |
gatgtctctaacagcaacttcc |
28848379 |
T |
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