View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_68 (Length: 342)
Name: NF7863_low_68
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_68 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 37 - 327
Target Start/End: Complemental strand, 4530578 - 4530289
Alignment:
| Q |
37 |
tgttacctcaatcatggcagtatgaaccaccatccaaatgtcgtaaaatattaatcgatttaagagagtatat--tcaaaaacacatccatgattgagga |
134 |
Q |
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| T |
4530578 |
tgttacctcaatcat---agtatgaaccaccatccaaatgtcgtaaaatattaatcgatttaagagagtatatattcaaaaacacatccatgattgagga |
4530482 |
T |
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| Q |
135 |
aagatttttgactcaagtaaaatacttgagtaatgatggtctcataggaaggatctcaacttttcggatgcgagagattttacgccagtcttgaccatat |
234 |
Q |
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| T |
4530481 |
aagatttttgactcaagtaaaatacttgagtaatgatggtctcataggaaggatctcaacttttcggatgcgagagattttacgccagtcttgaccatat |
4530382 |
T |
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| Q |
235 |
ggttttgcatatctttcctctaataatgagcagttatacatgcaaagtttctgcaaagatacaaggttacacatcgcttcaggcagtgatgtc |
327 |
Q |
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| T |
4530381 |
ggttttgcatatctttcctctaataatgagcagttatacatgcaaagtttctgcaaagatacaaggttacgcatcgcttcgggcagtgatgtc |
4530289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 97 - 177
Target Start/End: Complemental strand, 4499512 - 4499433
Alignment:
| Q |
97 |
taagagagtatattcaaaaacacatccatgattgaggaaagatttttgactcaagtaaaatacttgagtaatgatggtctc |
177 |
Q |
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| T |
4499512 |
taagagagtggattcagaaatacctccatgattgaggaaagatttt-gactcaagtaaaatacttgagtaatgatggtctc |
4499433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 4520978 - 4520878
Alignment:
| Q |
72 |
aaatgtcgtaaaatattaatcgatttaagagagtatattcaaaaacacatccatgattgaggaaagatttttgactcaagtaaaatacttgagtaatgat |
171 |
Q |
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| T |
4520978 |
aaatgtcataaaaaattgatggatataagagagtggattcagaaatacctccatgattgatgaaagatttt-gactcaagaaaaatacttgagtaatgat |
4520880 |
T |
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| Q |
172 |
gg |
173 |
Q |
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|| |
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| T |
4520879 |
gg |
4520878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 4499084 - 4499020
Alignment:
| Q |
263 |
agcagttatacatgcaaagtttctgcaaagatacaaggttacacatcgcttcaggcagtgatgtc |
327 |
Q |
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| T |
4499084 |
agcagttagaaatgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgtc |
4499020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 18033396 - 18033449
Alignment:
| Q |
274 |
atgcaaagtttctgcaaagatacaaggttacacatcgcttcaggcagtgatgtc |
327 |
Q |
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| T |
18033396 |
atgcaaagtttctgcaaagatacaaggttactcatttcttcgggcagtgatgtc |
18033449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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