View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_70 (Length: 335)
Name: NF7863_low_70
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 24852452 - 24852776
Alignment:
| Q |
1 |
tgtgtagtgacctaaagaaagaattggcataccatgaccatttcccattatgacttgttcttggccattatctaggtttttctgaatggatgtgagatga |
100 |
Q |
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| T |
24852452 |
tgtgtagtgacctaaagaaagaattggcataccatgaccatttcccattatgacttgttcttggccattatctaggtttttctgaatggatgtgagatga |
24852551 |
T |
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| Q |
101 |
tgtgaagcaccaaaatctagataccaggttgtatcaagatgagaagcaggtgcagaggaaattgaggtcttggagctggatgagcaaattaaccattaga |
200 |
Q |
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| T |
24852552 |
tgtgaagcaccaaaatctagataccaggttgtatcaagatgagaagcaggtgcagaggaaattgaggtcttggagctggatgagcaaattaaccattaga |
24852651 |
T |
|
| Q |
201 |
attatgatcaaaaagataccgaaaacgagtagcatcatatgcccaactgaagcataaatttgatactcgggatgaaaagagccacggcttcaatcaaagc |
300 |
Q |
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| T |
24852652 |
attatgataaaaaagataccgaaaacgagtagcatcatatgcccaactgaagcataaatttgatactcgggatgaaaagagccacggcttcaatcaaagc |
24852751 |
T |
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| Q |
301 |
gaccttggccacgaccagtgttata |
325 |
Q |
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| T |
24852752 |
gaccttggccacgaccagtgttata |
24852776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 24851138 - 24851200
Alignment:
| Q |
10 |
acctaaagaaagaattggcataccatgaccatttcccattatgacttgttcttggccattatc |
72 |
Q |
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| T |
24851138 |
acctaaagaaggaattggcataccttgaccatttcccattatgacttgttcttggccattatc |
24851200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 155 - 319
Target Start/End: Original strand, 24848173 - 24848335
Alignment:
| Q |
155 |
gaggaaattgaggtcttggagctggatgagcaaattaaccattagaattatgatcaaaaagataccgaaaacgagtagcatcatatgcccaactgaagca |
254 |
Q |
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|||||||||||| | |||||||||||||| ||||||||||||||| | | | |||||| ||||| ||| ||||||||||||| ||| |||||| ||||| |
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| T |
24848173 |
gaggaaattgagattttggagctggatgaccaaattaaccattagcagttttatcaaatagatatcgagaacgagtagcatc--atgtccaactcaagca |
24848270 |
T |
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| Q |
255 |
taaatttgatactcgggatgaaaagagccacggcttcaatcaaagcgaccttggccacgaccagt |
319 |
Q |
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| T |
24848271 |
caagtttgaatttggagatgaaaagagccaggacctcaaccaaagcgacttttgccatgaccagt |
24848335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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