View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_71 (Length: 331)
Name: NF7863_low_71
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 156; Significance: 7e-83; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 149 - 316
Target Start/End: Original strand, 30839535 - 30839702
Alignment:
| Q |
149 |
tataattcatcacattcaatcgtcatgttctattctcatgacatcaatgtatgactttccctcaagtttacgagcaaataagttggtgaagtactcctct |
248 |
Q |
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| T |
30839535 |
tataattcatcacattcaatcgtcatgttctattctcataacatcaatgtatgactttccctcaagtttacgagcaaataagttggtgaagtactcctct |
30839634 |
T |
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| Q |
249 |
actccaacttttttgaaccgagctggtgtttgttcagtaactaagcttttcacaggacctacaatact |
316 |
Q |
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| T |
30839635 |
actccaacttttttgaaccgagctggtgtttgttcagtaattaagcttttcacaggacctaaaatact |
30839702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 30839407 - 30839485
Alignment:
| Q |
73 |
tgtctaacttataattagatgcatatcatacaaacaataggatgaaacttaatcatctttggtcatacaactctcttat |
151 |
Q |
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| T |
30839407 |
tgtctaacttataattagatgcatatcatacaaacaataggatgaaacttaatcatctttggtcatacaactctcttat |
30839485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 315
Target Start/End: Original strand, 30833921 - 30834087
Alignment:
| Q |
149 |
tataattcatcacattcaatcgtcatgttctattctcatgacatcaatgtatgactttccctcaagtttacgagcaaataagttggtgaagtactcctct |
248 |
Q |
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| T |
30833921 |
tataatttatcaaattcaatcatcatgctctattctcatgtcatcgatgaaggcctttccttcaagtttacgagcaaagaagttcttaaagtattcatct |
30834020 |
T |
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| Q |
249 |
actccaacttttttgaaccgagctggtgtttgttcagtaactaagcttttcacaggacctacaatac |
315 |
Q |
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| T |
30834021 |
actccaacttttttgaaccgaggtggtgtttcttcagtgattaagctctccaaaggacctacaatac |
30834087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 316
Target Start/End: Original strand, 30826338 - 30826492
Alignment:
| Q |
162 |
attcaatcgtcatgttctattctcatgacatcaatgtatgactttccctcaagtttacgagcaaataagttggtgaagtactcctctactccaacttttt |
261 |
Q |
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| T |
30826338 |
attcaatcatgatgatctaatctcatgtcatcaatgaatgactttccgtcaagtttacgagcaaagaatttttttaagtattcctctactccaacttttt |
30826437 |
T |
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| Q |
262 |
tgaaccgagctggtgtttgttcagtaactaagcttttcacaggacctacaatact |
316 |
Q |
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| T |
30826438 |
taaaccgtggtggtgttttttcagtaatcaagctctccattggacctacaatact |
30826492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Original strand, 30837531 - 30837585
Alignment:
| Q |
97 |
atcatacaaacaataggatgaaacttaatcatctttggtcatacaactctcttat |
151 |
Q |
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| T |
30837531 |
atcatacaaataataggatgagagttaatcatctttagtgatacaactctcttat |
30837585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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