View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_75 (Length: 314)
Name: NF7863_low_75
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_75 |
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Alignment Details
Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 2165940 - 2166105
Alignment:
| Q |
20 |
ggtcacacactcttaacacacaccaataaaaattaaccacctcagccttcctttacctattcactgggttaatcagtttttacaaattctctgtcnnnnn |
119 |
Q |
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| T |
2165940 |
ggtcacaccctct-aacacacaccaataaaaattaaccacctcaaccttcctttacctattcaccgggttaaccagcttctaaaaattctctgtcagaaa |
2166038 |
T |
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| Q |
120 |
nnnnnnnnnnnngttgttgaacgatccagttctttcacacagaaaagttacttaacaattattatta |
186 |
Q |
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| T |
2166039 |
caaacaaaaaaagttgttgaacgattcagttctttcacacagaaaagttgcttaacaattattatta |
2166105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 298
Target Start/End: Original strand, 2167574 - 2167609
Alignment:
| Q |
263 |
atatcatttccttccgattttctcatggctcctgat |
298 |
Q |
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| T |
2167574 |
atatcatttccttccgattttctcatggctcctgat |
2167609 |
T |
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