View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_77 (Length: 292)
Name: NF7863_low_77
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_77 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 9329375 - 9329649
Alignment:
| Q |
1 |
aaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatgagttcattgctaaacatgttg |
100 |
Q |
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| T |
9329375 |
aaaataacataacataacaaaccaaattcaaccacttttcccagcatcttttcatttgaatatgtaattaagaattatgagttcaatgctaaacatgttg |
9329474 |
T |
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| Q |
101 |
tctggataaaa---tgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaatttctgatttctcagttaatct |
197 |
Q |
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| T |
9329475 |
tctggataaaaaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaacttcaatttctgatttctcagttaatct |
9329574 |
T |
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| Q |
198 |
agctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
272 |
Q |
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| T |
9329575 |
agctgcatcacttagtctaagacatgaaagttgaaacataacttctcttaatacctttggaacaaccacctctga |
9329649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9335181 - 9335286
Alignment:
| Q |
1 |
aaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaattaagaattatgagttcattgctaaacatgttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
9335181 |
aaaataacataacataacaaaccaaattcaaccactttttccagcatcttttcatctgaatatgtaattaagaattagaaattcattgctaaacatgttg |
9335280 |
T |
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| Q |
101 |
tctgga |
106 |
Q |
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|||||| |
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| T |
9335281 |
tctgga |
9335286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 9336120 - 9336184
Alignment:
| Q |
103 |
tggataaaatgtttgcttgattcatagaaggctagtagtattatggactccaacacggattataaaac |
170 |
Q |
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| T |
9336120 |
tggataaaatgtttgcttgattcatagaaggc---tagcattatggactacaacacggagtatcaaac |
9336184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 231059 - 231111
Alignment:
| Q |
18 |
caaaccaaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
70 |
Q |
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| T |
231059 |
caaaccaaattccacctcgttttccagcatcttttcatatgaatgtgtaatta |
231111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 252113 - 252067
Alignment:
| Q |
24 |
aaattcaaccactttttccagcatcttttcatttgaatatgtaatta |
70 |
Q |
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| T |
252113 |
aaattccacctcattttccagcatcttttcatatgaatatgtaatta |
252067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 8814898 - 8814852
Alignment:
| Q |
37 |
ttttccagcatcttttcatttgaatatgtaattaagaattatgagtt |
83 |
Q |
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| T |
8814898 |
ttttccagcatcttttcatatgaatatgtaattaggacttaagagtt |
8814852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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