View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7863_low_79 (Length: 281)
Name: NF7863_low_79
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_79 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 22 - 265
Target Start/End: Complemental strand, 44642348 - 44642105
Alignment:
| Q |
22 |
aaagtattagtacctgtttggctacaaattcaggataattatcttgaagtaattgaagggcttgtttggtagcttgtctaagctcccatttggtaggtcc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44642348 |
aaagtattagtacctgtttggctacaaattcaggataattatcttgaagcaattgaagggcttgtttggtagcttgtctaagctcccatttggtaggtcc |
44642249 |
T |
|
| Q |
122 |
aggagaattcttaagatcattaacctgaacaatggtgcatataccaccaggggtaaaatccaatttccttatactcttctccaagaccagaattctccat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44642248 |
aggagaattcttaagatcattaacctgaacaatggtgcatataccaccaggggtaaaatccaatttccttatactcttctccaagaccagaattctccat |
44642149 |
T |
|
| Q |
222 |
ttcaagaatctttctctcttctcttcatctgaaaatgttttctt |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44642148 |
ttcaagaatctttctctcttctcttcatctgaaaatgttttctt |
44642105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 32 - 256
Target Start/End: Complemental strand, 39893800 - 39893576
Alignment:
| Q |
32 |
tacctgtttggctacaaattcaggataattatcttgaagtaattgaagggcttgtttggtagcttgtctaagctcccatttggtaggtccaggagaattc |
131 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| || |||| | |||||||||||||||||||||||||||||| |||||||| ||||||||||||| | |
|
|
| T |
39893800 |
tacctgtttggccacaaattcagggtaattgtcctgaaacagttgaagggcttgtttggtagcttgtctaagttcccatttacctggtccaggagaatcc |
39893701 |
T |
|
| Q |
132 |
ttaagatcattaacctgaacaatggtgcatataccaccaggggtaaaatccaatttccttatactcttctccaagaccagaattctccatttcaagaatc |
231 |
Q |
| |
|
||||||||||| || |||||||||||||| | ||||||| || |||||||||| ||||| ||||||||||| | || | ||||||||||||| | ||| |
|
|
| T |
39893700 |
ttaagatcattgacatgaacaatggtgcaaacaccaccatggttaaaatccaaattcctaatactcttctcaaggaactgaattctccatttaaggaaat |
39893601 |
T |
|
| Q |
232 |
tttctctcttctcttcatctgaaaa |
256 |
Q |
| |
|
| | ||||||||||||||| ||||| |
|
|
| T |
39893600 |
tatgtctcttctcttcatcagaaaa |
39893576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University