View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_low_80 (Length: 281)

Name: NF7863_low_80

Description: NF7863

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7863_low_80

[»] chr8 (3 HSPs)

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 3)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 57; E-Value: 7e-24

Query Start/End: Original strand, 1 - 57

Target Start/End: Original strand, 2179660 - 2179716

Alignment:

Q	1	tcacttcccagttaacaatgataagcgataaaatcaagatgccccaaccgatgaaaa	57	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2179660	tcacttcccagttaacaatgataagcgataaaatcaagatgccccaaccgatgaaaa	2179716	T

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Target: chr8; HSP #2

Raw Score: 52; E-Value: 7e-21

Query Start/End: Original strand, 41 - 136

Target Start/End: Original strand, 2181585 - 2181680

Alignment:

Q	41	gccccaaccgatgaaaacgatgatagcagcagtccacgaaacaagactcacaactataaacgatgttgcagtcgatagcagaagtatgaatatgat	136	Q
		\|\|\|\|\|\|\| \| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	2181585	gccccaaacaatcaaaatgatgatagcagcgatccacgaaacaagactcacttctataaacgatattgcagttgatagcagaattatgaatatgat	2181680	T

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Target: chr8; HSP #3

Raw Score: 30; E-Value: 0.0000001

Query Start/End: Original strand, 62 - 139

Target Start/End: Original strand, 2162022 - 2162099

Alignment:

Q	62	gatagcagcagtccacgaaacaagactcacaactataaacgatgttgcagtcgatagcagaagtatgaatatgatccc	139	Q
		\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	2162022	gatagtagcagtcgtcgaaacaagaatcacttctataaatgatattgcacttgatagaagaagtatgaataagatccc	2162099	T

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