View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_81 (Length: 280)
Name: NF7863_low_81
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_81 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 23385469 - 23385652
Alignment:
| Q |
13 |
gaacctgtgactttgaggagtaacacacacatttaagaagagagttaaggatgctttattttcatcactcactctaacattgatcttgaggaggagcact |
112 |
Q |
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| T |
23385469 |
gaacctgtgaccttgaggagtaacactcacatttaagaagagagttaaggatgctttattttcatcactcactctaacattgatcttgaggaggagcact |
23385568 |
T |
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| Q |
113 |
cacatttaagaatagagttaattatactttattttcaataaactttctagcactcacatttggatgatctccttcactattatg |
196 |
Q |
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| T |
23385569 |
cacatttaagaatagagttaagtatgctttattttcaatactctttctagcactcacatttggatgatctccttcactattatg |
23385652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 23385717 - 23385749
Alignment:
| Q |
233 |
atgctccaaatgtttagtcttagacgtgaggaa |
265 |
Q |
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| T |
23385717 |
atgctccaaatgtttagtcttagacgtgaggaa |
23385749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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