View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_low_82 (Length: 280)

Name: NF7863_low_82
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_low_82
NF7863_low_82
[»] chr3 (7 HSPs)
chr3 (10-268)||(26432588-26432846)
chr3 (11-268)||(11897148-11897405)
chr3 (10-125)||(53608336-53608451)
chr3 (10-164)||(38647179-38647333)
chr3 (9-125)||(17718394-17718510)
chr3 (9-125)||(19019623-19019739)
chr3 (10-81)||(55024879-55024950)
[»] chr2 (8 HSPs)
chr2 (11-268)||(14653570-14653827)
chr2 (10-266)||(40328174-40328430)
chr2 (10-266)||(35135114-35135370)
chr2 (19-164)||(177504-177649)
chr2 (10-221)||(3778988-3779199)
chr2 (15-164)||(26791322-26791471)
chr2 (11-221)||(19265413-19265623)
chr2 (10-44)||(39012526-39012560)
[»] chr8 (4 HSPs)
chr8 (11-268)||(23132475-23132732)
chr8 (17-146)||(26587230-26587359)
chr8 (10-101)||(38348466-38348557)
chr8 (121-263)||(14760032-14760174)
[»] chr1 (4 HSPs)
chr1 (11-268)||(20284849-20285106)
chr1 (9-176)||(50236550-50236717)
chr1 (9-167)||(50451893-50452051)
chr1 (13-110)||(1524969-1525066)
[»] chr4 (5 HSPs)
chr4 (10-266)||(54477303-54477558)
chr4 (10-125)||(33803974-33804089)
chr4 (12-167)||(3881716-3881871)
chr4 (57-161)||(14307826-14307930)
chr4 (57-125)||(14291777-14291845)
[»] scaffold0036 (1 HSPs)
scaffold0036 (10-268)||(75904-76161)
[»] chr5 (4 HSPs)
chr5 (10-166)||(7817131-7817287)
chr5 (58-164)||(32874457-32874563)
chr5 (27-125)||(23945012-23945110)
chr5 (11-123)||(31814643-31814754)
[»] chr6 (4 HSPs)
chr6 (10-164)||(24893836-24893990)
chr6 (10-164)||(24990663-24990817)
chr6 (67-180)||(13599639-13599752)
chr6 (67-124)||(35233542-35233599)
[»] chr7 (2 HSPs)
chr7 (19-190)||(1579133-1579304)
chr7 (10-161)||(16769965-16770116)
[»] scaffold0214 (1 HSPs)
scaffold0214 (15-125)||(8968-9078)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 268
Target Start/End: Complemental strand, 26432846 - 26432588
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||    
T  26432846 gacatcaccatcaaactcatcatgcattgtgtctcttcatcaaactactctatactttggaatgggaacaagttgccgtctttcaaaccttctcatggtc 26432747  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 209  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26432746 tccgacaaggtgatccattgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 26432647  T
Q  210 aatccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgtcc 268  Q
     || ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26432646 gattcaaatcactcctacggggccgcatttatcccacctcctttttgcaaatgatgtcc 26432588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 11897148 - 11897405
Alignment:
Q  11 acatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtct 110  Q
    ||||||||||||| |||||||||||||| ||  ||||  | || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||    
T  11897148 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 11897247  T
Q  111 ccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacca 210  Q
    |||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || ||| |||||||||| || |||  |||||||||||||| |||     
T  11897248 ccgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctactatcaactcagcagtcgtccaaggaagatgggcaccc 11897347  T
Q  211 atccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgtcc 268  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  11897348 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 11897405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 10 - 125
Target Start/End: Complemental strand, 53608451 - 53608336
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||||||||| ||||||||||||||||| || || || | || |||||| ||||||||||| |||||  ||||  |||||| |||||| |||||||    
T  53608451 gacatcaccatcaagctcatcatgcattgtgtttcctcctctaccttctctattctttggaatggaaacaaaatgccttctttcaggccttcacatggtc 53608352  T
Q  110 tccgacagggtgatcc 125  Q
    || |||||||||||||    
T  53608351 tcagacagggtgatcc 53608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 38647333 - 38647179
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||||||||| ||||||||||||||||| || ||||| | || |||||| |||||||| || || ||  |||| ||||| |||||||| || ||||    
T  38647333 gacatcaccatcaagctcatcatgcattgtgtttcatcatccaccttctctattctttggaacggtaataaaatgcccccttttaagccttcccacggtc 38647234  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagct 164  Q
    || |||| ||||||||| | || || || ||||||||  | ||||||||||||||    
T  38647233 tcagacaaggtgatccgctctctccctacctcttcattttatgcatggaaaagct 38647179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 17718510 - 17718394
Alignment:
Q  9 ggacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggt 108  Q
    |||| |||||||||| ||||||||||||||||| || ||||| | || ||||||  | |||||||| |||||  |||| || ||||||||||| ||||||    
T  17718510 ggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggt 17718411  T
Q  109 ctccgacagggtgatcc 125  Q
    ||| |||||||||||||    
T  17718410 ctctgacagggtgatcc 17718394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 19019739 - 19019623
Alignment:
Q  9 ggacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggt 108  Q
    |||| |||||||||| ||||||||||||||||| || ||||| | || ||||||  | |||||||| |||||  |||| || ||||||||||| ||||||    
T  19019739 ggacgtcaccatcaagctcatcatgcattgtgtttcctcatccaccttctctattttgtggaatggaaacaaaatgcctcccttcaagccttctcatggt 19019640  T
Q  109 ctccgacagggtgatcc 125  Q
    ||| |||||||||||||    
T  19019639 ctctgacagggtgatcc 19019623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 55024950 - 55024879
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaag 81  Q
    ||||| || ||||||||||| |||||||||||||||||||| | || |||| | ||||||||||| ||||||    
T  55024950 gacattacaatcaaactcattatgcattgtgtctcttcatccaccttctctgttctttggaatggcaacaag 55024879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 14653827 - 14653570
Alignment:
Q  11 acatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtct 110  Q
    ||||||||||||| |||||||||||||| ||  ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  14653827 acatcaccatcaagctcatcatgcattgcgtagcttctccgagttactctatactttggaatgggaacaagttgccgcctttcaagccttctcatggcct 14653728  T
Q  111 ccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacca 210  Q
    || ||| ||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| ||||| || ||  ||||||||||||||| |||     
T  14653727 ccaacaaggtgatccgttgtccccttattttttcatcctttgcatggaaaagctatccgctgctataaactcagcagttgcccaaggaagatgggcaccc 14653628  T
Q  211 atccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgtcc 268  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14653627 atccaaatcactcctacggggccgcatttatcccatctcctatttgcagatgatgtcc 14653570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 40328174 - 40328430
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    ||||| ||||||||||||||||||||||||||  | ||| |||||||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  40328174 gacattaccatcaaactcatcatgcattgtgttacctcaccgagctactcaattttatggaatggaaacaagctttctcctttcaagcctactcatggac 40328273  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 209  Q
    | || || ||||| |||||||| |||||||| |||||| | || |||||||| || || | ||| ||||| ||||| |||| |||||| |||||||||||    
T  40328274 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaacc 40328373  T
Q  210 aatccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgt 266  Q
     || ||| ||||   ||||||| |  |  |||| ||||| || ||||||||||||||    
T  40328374 gatacaaatcacaaatacgggggccaaggtatctcacctactctttgcagatgatgt 40328430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 35135370 - 35135114
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    ||||| ||||||||||||||||||||||||||  | ||| | |||||||| ||  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  35135370 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcaattttatggaatggaaacaagctctctcctttcaagcctactcatggac 35135271  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 209  Q
    | || || ||||| |||||||| |||||||| |||||| | || |||||||| || || | ||| ||||| ||||| |||| |||||| |||||||||||    
T  35135270 ttcgtcaaggtgacccgttgtctccttatcttttcatcctatgtatggaaaaactctctgttgcaatcaattccgctgtcaaccaagggagatgggaacc 35135171  T
Q  210 aatccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgt 266  Q
     || ||| ||||   ||||||| |  |  |||| ||||| || ||||||||||||||    
T  35135170 gatacaaatcacaaatacgggggccaaggtatctcacctactctttgcagatgatgt 35135114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 177504 - 177649
Alignment:
Q  19 atcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagg 118  Q
    |||||||||||||||||||||||| |||| || |  | |||| | ||||||||||| ||||| | ||| ||| |||||||| | ||||||||  |||| |    
T  177504 atcaaactcatcatgcattgtgtcacttcttcaacattctctgttctttggaatggaaacaaatggcctcctatcaagcctactcatggtctaagacaag 177603  T
Q  119 gtgatccgttgtccccttatctcttcatcatttgcatggaaaagct 164  Q
    |||| || ||||| ||||| || |||||||| ||||||||||||||    
T  177604 gtgaccctttgtctccttacctattcatcatctgcatggaaaagct 177649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 3779199 - 3778988
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    ||||| ||||||||||||||||||||||||||  | ||| | ||||||||  |  | |||||||| |||||| |  | |||||||||||| | ||||| |    
T  3779199 gacattaccatcaaactcatcatgcattgtgttacctcaccaagctactcattgttatggaatggaaacaagctctctcctttcaagcctactcatggac 3779100  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 209  Q
    | || || ||||| ||| |||| |||||||| |||||| | || |||||||| || || | ||| ||||| ||||| ||||  ||||| |||||||||||    
T  3779099 ttcgtcaaggtgacccgctgtctccttatcttttcatcctctgtatggaaaaactctctgttgcaatcaattccgctgtcaatcaagggagatgggaacc 3779000  T
Q  210 aatccaactcac 221  Q
    ||| ||| ||||    
T  3778999 aatacaaatcac 3778988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 26791322 - 26791471
Alignment:
Q  15 caccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccga 114  Q
    ||||||||| |||||||||||||| ||  ||||||| |||| |||||| ||||||||||| || | |||||| |||||| ||||| | ||||| ||| |     
T  26791322 caccatcaagctcatcatgcattgcgttacttcatccagcttctctattctttggaatggaaataggttgcctcctttcgagcctactcatggcctcagg 26791421  T
Q  115 cagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagct 164  Q
    |||||||||||| | ||||| || || || ||  |||||||||| |||||    
T  26791422 cagggtgatccgctttccccgtacctttttattctttgcatggagaagct 26791471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 19265413 - 19265623
Alignment:
Q  11 acatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtct 110  Q
    |||| ||||||||||||||||||||||||||  | ||| | ||||||||  |  | |||||||| |||||| |  | |||||||||||| | ||||| ||    
T  19265413 acattaccatcaaactcatcatgcattgtgttacctcaccaagctactccttgttatggaatggaaacaagctctctcctttcaagcctactcatggact 19265512  T
Q  111 ccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacca 210  Q
     || || ||||| ||| |||| |||||||| |||||| | |  |||||||| || || | ||| ||||| ||||| ||||  ||||| ||||||||||||    
T  19265513 tcgtcaaggtgacccgctgtctccttatcttttcatcctctatatggaaaaactctctgttgcaatcaattccgctgtcaatcaagggagatgggaacca 19265612  T
Q  211 atccaactcac 221  Q
    || ||| ||||    
T  19265613 atacaaatcac 19265623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 39012526 - 39012560
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctc 44  Q
    ||||| |||||||||||||||||||||||||||||    
T  39012526 gacattaccatcaaactcatcatgcattgtgtctc 39012560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 23132732 - 23132475
Alignment:
Q  11 acatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtct 110  Q
    |||||||||||||  ||||||||||||| ||  ||||  | || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||    
T  23132732 acatcaccatcaagttcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaacaagttgccgcctttcaagccttctcatggcct 23132633  T
Q  111 ccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacca 210  Q
    |||||| |||||| |||||||||||||||| |||||| |||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| |||     
T  23132632 ccgacaaggtgatacgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 23132533  T
Q  211 atccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgtcc 268  Q
    |||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  23132532 atccaaatcacccctacggggccccatttatcccatctcctatttgcagatgatgtcc 23132475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 146
Target Start/End: Original strand, 26587230 - 26587359
Alignment:
Q  17 ccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgaca 116  Q
    |||||||||||||||||||||| ||| ||||||| | || | | || ||||| ||||| ||||| ||||| || ||||||||| | ||||| ||||||||    
T  26587230 ccatcaaactcatcatgcattgcgtcacttcatctaccttcaccatcctttgaaatggtaacaaattgccccccttcaagcctactcatggcctccgaca 26587329  T
Q  117 gggtgatccgttgtccccttatctcttcat 146  Q
     ||||| || ||||| || || ||||||||    
T  26587330 aggtgacccattgtctccctacctcttcat 26587359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 101
Target Start/End: Original strand, 38348466 - 38348557
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttc 101  Q
    |||||||||||||| |||||||||||||||||  | ||| | | || |||||| ||||||||||| ||||  ||| | ||||||||||||||    
T  38348466 gacatcaccatcaagctcatcatgcattgtgttacctcacccaccttctctatcctttggaatggcaacagattgtctcctttcaagccttc 38348557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 14760032 - 14760174
Alignment:
Q  121 gatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaaccaatccaactca 220  Q
    |||||||||||||| || ||||||||  |||| ||||||||||| ||   |||||| || || || ||||  |||||||| ||||||||  | ||| |||    
T  14760032 gatccgttgtccccatacctcttcattctttgtatggaaaagctctctattgctataaattcagcggtcaatcaaggaagttgggaaccggttcaaatca 14760131  T
Q  221 ctcctacggggccgcatttatcccacctcctatttgcagatga 263  Q
    |   ||||||||| ||  |||| ||||| ||||||||||||||    
T  14760132 caaatacggggccccagatatctcacctactatttgcagatga 14760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 20284849 - 20285106
Alignment:
Q  11 acatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtct 110  Q
    ||||||||||||| |||||||||||||| ||  ||||  | || ||||||||||||||||| |||||   ||||||||||||| ||||||| ||||| ||    
T  20284849 acatcaccatcaagctcatcatgcattgcgtagcttctcctagttactctatactttggaacgggaaagggttgccgcctttcgagccttctcatggcct 20284948  T
Q  111 ccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacca 210  Q
     ||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||||||| || ||| ||||||||||||||| |||     
T  20284949 gcgacaaggtgatccgttgtccccttatcttttcatcctttgcatggaaaagctttcagctgctatcaactcagcagtcgcccaaggaagatgggcaccc 20285048  T
Q  211 atccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgtcc 268  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  20285049 atccaaatcacccctacggggccgcatttatcccatctcctatttgcagatgatgtcc 20285106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 176
Target Start/End: Complemental strand, 50236717 - 50236550
Alignment:
Q  9 ggacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggt 108  Q
    ||||||||||| |||||||||||||||||||||||| ||| | | |||||||||  | ||||| ||||||||| |||| |||||||||||| | |||||     
T  50236717 ggacatcaccaccaaactcatcatgcattgtgtctcctcacccacctactctatcttatggaacgggaacaagatgccccctttcaagcctactcatggc 50236618  T
Q  109 ctccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctat 176  Q
    ||| || | ||||||||| | |||||||| || |||||| | || ||||| || ||||| | ||||||    
T  50236617 ctcagataaggtgatccgctttccccttaccttttcatcttgtgtatggagaaactatcagttgctat 50236550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 50451893 - 50452051
Alignment:
Q  9 ggacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggt 108  Q
    |||||||||||||||||| ||||||||||||||| | || || |  | ||||||  | |||||||| |||||  |||||| |||||| ||| | |||||     
T  50451893 ggacatcaccatcaaacttatcatgcattgtgtcacctcctccactttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatggc 50451992  T
Q  109 ctccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatc 167  Q
    |||||||| ||||||||| | || ||||| ||||||||  |||| ||||| ||||||||    
T  50451993 ctccgacaaggtgatccgctttctccttacctcttcattctttgtatggagaagctatc 50452051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 1524969 - 1525066
Alignment:
Q  13 atcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtct 110  Q
    |||||||||||||||||||||||||||||  | ||  |   || |||||| ||||||||||| ||||| || || |||||||||||||| || |||||    
T  1524969 atcaccatcaaactcatcatgcattgtgttacctctcctgccttctctattctttggaatggtaacaaattacctcctttcaagccttcccacggtct 1525066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 54477558 - 54477303
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||||||||| ||||||||||||||||| || ||||| |  |||| ||| ||||||||||| |||||| | ||  ||||||||||| | |||||||    
T  54477558 gacatcaccatcaagctcatcatgcattgtgtttcatcatcaaaatactttatcctttggaatggaaacaagcttccatctttcaagcctacacatggtc 54477459  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 209  Q
    | || || |||||||| ||||||||||||||||||||  ||||||||||||| || ||   ||||||||| || | |||||  ||||| |  ||||||||    
T  54477458 tgcgccaaggtgatcctttgtccccttatctcttcattctttgcatggaaaatctctctattgctatcaattcagtcgtcaatcaagggaattgggaacc 54477359  T
Q  210 aatccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgt 266  Q
    ||||||| ||||   || |||||| ||  |||| |||||||| ||||||||||||||    
T  54477358 aatccaaatcacaaata-ggggccccaaatatctcacctcctctttgcagatgatgt 54477303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 125
Target Start/End: Original strand, 33803974 - 33804089
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||||||||| ||||||||||||||||| || ||||| |  ||||||||||| |||||||| |||||  |||| |||||||||||||| ||  |||    
T  33803974 gacatcaccatcaagctcatcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaatgcctcctttcaagccttcacacagtc 33804073  T
Q  110 tccgacagggtgatcc 125  Q
    || |||||||||||||    
T  33804074 tcagacagggtgatcc 33804089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 3881716 - 3881871
Alignment:
Q  12 catcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctc 111  Q
    ||||||||||||||| ||||||||||||||| | || || | || ||||||  | |||||||| |||||  |||||| |||||| ||| | ||||| |||    
T  3881716 catcaccatcaaacttatcatgcattgtgtcacctcctccaccttctctatcttatggaatggtaacaaaatgccgcatttcaaacctacacatggcctc 3881815  T
Q  112 cgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatc 167  Q
    ||||| ||||||||| | || | ||| ||||||||  |||| ||||||||||||||    
T  3881816 cgacaaggtgatccgctttctctttacctcttcattctttgtatggaaaagctatc 3881871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 161
Target Start/End: Original strand, 14307826 - 14307930
Alignment:
Q  57 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagggtgatccgttgtccccttatctcttcatcatttgcatg 156  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||| ||| |||| || |||||    || ||||| || ||||||||||| |||    
T  14307826 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcctccctcgccttaccttttcatcatttgtatg 14307925  T
Q  157 gaaaa 161  Q
    |||||    
T  14307926 gaaaa 14307930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 14291777 - 14291845
Alignment:
Q  57 ctctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagggtgatcc 125  Q
    |||||| |||||||||||||||||| |||  ||||| |||||||| ||||| ||| |||| || |||||    
T  14291777 ctctattctttggaatgggaacaagatgcatccttttaagccttcccatggcctcagacaaggagatcc 14291845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 75904 - 76161
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||| ||||| |||||  |||||||| | |||||||| |||||||| ||  | |||||||| |||||| ||||  | ||||||||| | |||||||    
T  75904 gacatcactatcaagctcattttgcattgtatttcttcatctagctactcaattttatggaatgg-aacaagctgccttccttcaagcctactcatggtc 76002  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtcacccaaggaagatgggaacc 209  Q
    || |||| ||||| | ||||||||||||||| |||||| |||||||||||||||| || | |||||||||   |||  ||| |||||| | |||||||      
T  76003 tcagacaaggtgaccagttgtccccttatcttttcatcctttgcatggaaaagctctctgttgctatcaatctcgctatcaaccaagggacatgggaagt 76102  T
Q  210 aatccaactcactcctacggggccgcatttatcccacctcctatttgcagatgatgtcc 268  Q
     |||||| ||||   || |||||| ||  |||| |||||| | ||||||||||||||||    
T  76103 gatccaaatcacaaatagggggccccaggtatctcacctcttctttgcagatgatgtcc 76161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 166
Target Start/End: Original strand, 7817131 - 7817287
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||| ||||| ||||||||||||||||| || || || | |||||||||  | ||||||||||||||  | ||  ||||||||||| | |||||||    
T  7817131 gacatcacaatcaagctcatcatgcattgtgtatcatcctccaactactctattttatggaatgggaacaaacttccttctttcaagcctactcatggtc 7817230  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctat 166  Q
    || |||||||||| || || || ||||| || |||||  ||||||||||||||||||    
T  7817231 tcagacagggtgaccctttatctccttaccttttcattctttgcatggaaaagctat 7817287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 32874563 - 32874457
Alignment:
Q  58 tctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagggtgatccgttgtccccttatctcttcatcatttgcatgg 157  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| || || || ||| | || || ||| | ||||||||||||||||    
T  32874563 tctatcctttgaaatgggaacaagttgcctcctttcaagccttctcatggcctccgccaaggagacccgctctctccctatttattcatcatttgcatgg 32874464  T
Q  158 aaaagct 164  Q
    |||||||    
T  32874463 aaaagct 32874457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 23945012 - 23945110
Alignment:
Q  27 catcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagggtgatcc 125  Q
    ||||||||||||||| || ||||| |  ||||||||||| |||||||| |||||  | || |||||||||||||| || |||||| |||||||||||||    
T  23945012 catcatgcattgtgtttcctcatctacatactctatactgtggaatggaaacaaaattcctcctttcaagccttcacacggtctcagacagggtgatcc 23945110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 31814643 - 31814754
Alignment:
Q  11 acatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtct 110  Q
    ||||||| ||||| ||||||||||||||||| || ||||| |  |  ||||| ||||||||||| |||||  |||| || || ||||| || ||||||||    
T  31814643 acatcactatcaagctcatcatgcattgtgtttcctcatctactttttctatcctttggaatggtaacaaaatgcc-ccatttaagccctctcatggtct 31814741  T
Q  111 ccgacagggtgat 123  Q
    | |||| ||||||    
T  31814742 cagacaaggtgat 31814754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 24893990 - 24893836
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||||||||| |||||||||||||||||| | || || |  | ||| ||| | |||||||| |||||  |||| |||||||||||  | |||||||    
T  24893990 gacatcaccatcaagctcatcatgcattgtgtcacctcctccacattctccatattatggaatggtaacaaaatgccccctttcaagcccacacatggtc 24893891  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagct 164  Q
    || |||| ||||| ||| | || |||||||| |||||  | ||||||||||||||    
T  24893890 tcagacaaggtgacccgctctctccttatcttttcatactatgcatggaaaagct 24893836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 164
Target Start/End: Complemental strand, 24990817 - 24990663
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    |||||||||||||||||||||||||| |||||| | || || |  |  |||||  | ||||| || |||||  |||| |||||||||||  | |||||||    
T  24990817 gacatcaccatcaaactcatcatgcactgtgtcacctcctccactttttctattttatggaacggtaacaaaatgccccctttcaagcccacccatggtc 24990718  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagct 164  Q
    || |||| ||||| ||| | || |||||||| |||||  |||||||||| |||||    
T  24990717 tcagacaaggtgacccgctctctccttatcttttcattctttgcatggagaagct 24990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 13599639 - 13599752
Alignment:
Q  67 tggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaagctat 166  Q
    |||||||| |||||||| ||||  ||||||||| | |||| |||||| || ||||||||  | || ||||||||||||||| | || |||||||| || |    
T  13599639 tggaatggtaacaagtttccgcaattcaagcctactcatgatctccgtcaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaaacttt 13599738  T
Q  167 ccgctgctatcaac 180  Q
    | ||||| ||||||    
T  13599739 cagctgccatcaac 13599752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 35233542 - 35233599
Alignment:
Q  67 tggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagggtgatc 124  Q
    |||||||| |||||||||||   |||||||||| | |||||||||||||| |||||||    
T  35233542 tggaatggaaacaagttgcctaatttcaagcctacacatggtctccgacaaggtgatc 35233599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 1579304 - 1579133
Alignment:
Q  19 atcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccgacagg 118  Q
    ||||| ||||||||||||||||| ||||| || |  | |||||| || | |||| | ||||||||||| || ||  | ||| | ||||| ||| ||||||    
T  1579304 atcaatctcatcatgcattgtgtttcttcttcaactttctctattctctagaatagaaacaagttgcctccctttcatcctactcatgggctcagacagg 1579205  T
Q  119 gtgatccgttgtccccttatctcttcatcatttgcatggaaaagctatccgctgctatcaactccgccgtca 190  Q
    |||||||| | |||||||| ||||| ||  |||||||||||||||| ||| | || ||||||  ||||||||    
T  1579204 gtgatccgctctccccttacctctttattctttgcatggaaaagctctcctcagccatcaacaacgccgtca 1579133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 16770116 - 16769965
Alignment:
Q  10 gacatcaccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtc 109  Q
    ||||| ||||||||||| || ||||| ||||| ||||| || |  | ||||||  | |||||||| ||||| ||||||| |||||| ||| | |||||||    
T  16770116 gacattaccatcaaacttattatgcactgtgtttcttcttccactttctctattttatggaatggtaacaaattgccgcatttcaaacctactcatggtc 16770017  T
Q  110 tccgacagggtgatccgttgtccccttatctcttcatcatttgcatggaaaa 161  Q
    | ||||| ||||||||  | || ||||||||||||||| | || ||||||||    
T  16770016 ttcgacaaggtgatcctctttcaccttatctcttcatcttgtgtatggaaaa 16769965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 125
Target Start/End: Original strand, 8968 - 9078
Alignment:
Q  15 caccatcaaactcatcatgcattgtgtctcttcatcgagctactctatactttggaatgggaacaagttgccgcctttcaagccttcgcatggtctccga 114  Q
    ||||||||| |||||||||||||| ||  | ||||| || | |||||| ||||||||||| || | | |||| |||||| ||||||| ||||| |||       
T  8968 caccatcaagctcatcatgcattgcgttacctcatccagattctctattctttggaatggtaataggctgcctcctttcgagccttctcatggcctcacg 9067  T
Q  115 cagggtgatcc 125  Q
    |||||||||||    
T  9068 cagggtgatcc 9078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University