View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_low_85 (Length: 269)

Name: NF7863_low_85
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_low_85
NF7863_low_85
[»] chr5 (10 HSPs)
chr5 (2-254)||(29953477-29953729)
chr5 (16-254)||(29995250-29995488)
chr5 (22-254)||(29944564-29944796)
chr5 (39-254)||(30043721-30043936)
chr5 (23-254)||(30007046-30007277)
chr5 (2-254)||(29946516-29946768)
chr5 (16-254)||(30068238-30068477)
chr5 (16-254)||(29964759-29964997)
chr5 (16-254)||(30009801-30010039)
chr5 (107-254)||(30001014-30001161)
[»] chr6 (1 HSPs)
chr6 (182-256)||(31950817-31950891)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 3e-88; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 29953477 - 29953729
Alignment:
Q  2 catgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaa 101  Q
    |||||| |||| | |||||||||||||| ||  ||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||    
T  29953477 catgaacaaaccactaatgtagacaaaaatcgccatgaagactttgttgacatacttcttacatttatgcaccaaaccattgatctagaaaatgaagaaa 29953576  T
Q  102 atcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccga 201  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||| |||| ||||||||||||| | |||||    
T  29953577 atcatttcattgatcgaactaacatcaaggcaattttactagacttgactgtggcagcaattgatacatctgctaccgtgattgaatgggctttatccga 29953676  T
Q  202 acttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    ||||||||| |||||||| || |||||||  ||||||||||||||||||||||    
T  29953677 acttctaagacatccaagggtaatgaaaatccttcaagatgagatacaaaatg 29953729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 29995250 - 29995488
Alignment:
Q  16 taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat 115  Q
    ||||||| |||||||||||||| |||| ||||| ||||||||||||||| ||||| |||||||||||||| | |    |||| ||||||  |||||||||    
T  29995250 taatgtaaacaaaactcatcataaagattttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgat 29995349  T
Q  116 cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatc 215  Q
    ||||||||||||||||| ||||| || |||||| | ||||||||||| ||||||||||| ||| |||||||||||||| | || |||||| |||| ||||    
T  29995350 cgaactaacatcaaggctattttgctcgacatgatagtggcagcaatcgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatc 29995449  T
Q  216 caagagtgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  29995450 caagagtgatgaaaaagcttcaagatgagatacaaaatg 29995488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 22 - 254
Target Start/End: Original strand, 29944564 - 29944796
Alignment:
Q  22 agacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaact 121  Q
    ||||||||||| ||||||||||||||| |||||||||||  | |||| | |||||| ||||||||  || | |||| |||||||||||||||||||||||    
T  29944564 agacaaaactcgtcatgaagactttgtagacatacttctcacttttaagcaccaaaacattgatcatgggagtgaacaaaatcatgtcattgatcgaact 29944663  T
Q  122 aacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatccaagag 221  Q
    |||||||| || ||||||||||||||| |||||||| || ||  ||||||||| ||| | ||||| |||||| | ||||||||| |||||||||||||||    
T  29944664 aacatcaaagctattttactagacatggttgtggcatcatttagtacatctgctaccacaattgagtgggctttatccgaacttttaaggcatccaagag 29944763  T
Q  222 tgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    |||||||||||||||||||||| ||||||||||    
T  29944764 tgatgaaaaatcttcaagatgaaatacaaaatg 29944796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 254
Target Start/End: Complemental strand, 30043936 - 30043721
Alignment:
Q  39 aagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaactaacatcaaggcaatttt 138  Q
    |||| ||||| ||||||||||||||| ||||| |||||||||||||| | |    |||| ||||||  |||||||||||||||||||||||||| |||||    
T  30043936 aagattttgtagacatacttctttcaattatgcaccaaaccattgatattgagggtgaacaaaatctcgtcattgatcgaactaacatcaaggctatttt 30043837  T
Q  139 actagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaa 238  Q
     || |||||| | ||||||||||||||||||||||| ||| |||||||||||||| | || |||||| |||| |||||||||||||||||||| ||||||    
T  30043836 gctcgacatgatagtggcagcaattgatacatctgctacctcgattgaatgggctttatctgaacttttaagacatccaagagtgatgaaaaagcttcaa 30043737  T
Q  239 gatgagatacaaaatg 254  Q
    ||||||||||||||||    
T  30043736 gatgagatacaaaatg 30043721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 254
Target Start/End: Original strand, 30007046 - 30007277
Alignment:
Q  23 gacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgatcgaacta 122  Q
    |||||||||| | ||||||||||||| ||||||||||||||| ||||| |||||||||||||| | |    |||| ||||||  ||||||||||||||||    
T  30007046 gacaaaactcgtaatgaagactttgtagacatacttctttcaattatgcaccaaaccattgatgtcgagggtgaacaaaatctcgtcattgatcgaacta 30007145  T
Q  123 acatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatccaagagt 222  Q
    |||||||||| ||||| || |||||| | | |||| || || |||||||||| ||| ||||||| |||||| | || ||||||||||||||| |||||||    
T  30007146 acatcaaggctattttgctcgacatgatagcggcatcagttcatacatctgctaccacgattgagtgggctttatctgaacttctaaggcattcaagagt 30007245  T
Q  223 gatgaaaaatcttcaagatgagatacaaaatg 254  Q
    |||||||| |||||||||||||||||||||||    
T  30007246 gatgaaaattcttcaagatgagatacaaaatg 30007277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 29946516 - 29946768
Alignment:
Q  2 catgaagaaactaataatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaa 101  Q
    |||||| |||| | |||||||||||||||||||||||||||||| || |||||||| || ||| ||| |||||||||||| |||| |   |||||| | |    
T  29946516 catgaacaaacaactaatgtagacaaaactcatcatgaagacttcgtagacatactactctcaattaagaaccaaaccatagatcaaaagaatgaacaga 29946615  T
Q  102 atcatgtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggc-tatgtccg 200  Q
    | ||||| ||||||||| | ||||| ||||| || |||||||||| | || ||||||||||||| |||||||| ||||||||||||||||| | | || |    
T  29946616 aacatgttattgatcgaccaaacattaaggc-atattactagacacggttatggcagcaattgaaacatctgctaccgcgattgaatgggcttttatctg 29946714  T
Q  201 aacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    ||||| ||||| ||||||||||||||||||  ||||||||||| ||||||||||    
T  29946715 aacttttaaggaatccaagagtgatgaaaacccttcaagatgatatacaaaatg 29946768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 30068477 - 30068238
Alignment:
Q  16 taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat 115  Q
    ||||||| |||||||||||||| |||| || || ||||||||||||||| ||||| | |||||||||||| | |    |||| ||||||  || ||||||    
T  30068477 taatgtaaacaaaactcatcataaagatttcgtagacatacttctttcaattatgcatcaaaccattgatgtcgagggtgaacaaaatctcgtaattgat 30068378  T
Q  116 cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattg-aatgggctatgtccgaacttctaaggcat 214  Q
    ||| |||||||||| || ||||| || |||||| | ||||||||||||||||||||||| ||| |||||  |||||||| | || | |||| ||||||||    
T  30068377 cgatctaacatcaaagctattttgctcgacatgatagtggcagcaattgatacatctgctacctcgattttaatgggctttatctgcacttttaaggcat 30068278  T
Q  215 ccaagagtgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  30068277 ccaagagtgatgaaaattcttcaagatgagatacaaaatg 30068238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 29964759 - 29964997
Alignment:
Q  16 taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat 115  Q
    |||||||||||||  || ||||||||| ||  |||| |||||||| ||| || || |||||||  | |||| || ||||||| ||| |  ||| |||||     
T  29964759 taatgtagacaaagttcgtcatgaagatttcattgatatacttctctcaattgtgcaccaaacggtagatccagaaaatgaacaaagtggtgttattgac 29964858  T
Q  116 cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatc 215  Q
     |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |  | ||| ||||||| |||||| | || |||||| | || ||||    
T  29964859 agaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatc 29964958  T
Q  216 caagagtgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  29964959 caagagtgatgaaaaagcttcaagatgagatacaaaatg 29964997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 30010039 - 30009801
Alignment:
Q  16 taatgtagacaaaactcatcatgaagactttgttgacatacttctttcatttatgaaccaaaccattgatctaggaaatgaagaaaatcatgtcattgat 115  Q
    |||||||||||||  || ||||||||| ||  |||| |||||||| ||| || || |||||||  | |||| || ||||||| ||| |  ||| |||||     
T  30010039 taatgtagacaaagttcgtcatgaagatttcattgatatacttctctcaattgtgcaccaaacggtagatccagaaaatgaacaaagtggtgttattgac 30009940  T
Q  116 cgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttctaaggcatc 215  Q
     |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |  | ||| ||||||| |||||| | || |||||| | || ||||    
T  30009939 agaactaacatcaaggcaattttactagacatgattgtggcaggaattgatacagccactaccacgattgagtgggctttatctgaacttttcagacatc 30009840  T
Q  216 caagagtgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  30009839 caagagtgatgaaaaagcttcaagatgagatacaaaatg 30009801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 30001014 - 30001161
Alignment:
Q  107 gtcattgatcgaactaacatcaaggcaattttactagacatgcttgtggcagcaattgatacatctgcgaccgcgattgaatgggctatgtccgaacttc 206  Q
    |||||||||||||| | ||||||||| ||||| || |||||| | | |||| |||||||||||||| | | || ||| || |||||| | || ||||||     
T  30001014 gtcattgatcgaacgatcatcaaggctattttgctcgacatgataggggcatcaattgatacatcttcaaacgtgatagagtgggctttatctgaacttt 30001113  T
Q  207 taaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatg 254  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  30001114 taaggcatccaagagtgatgaaaattcttcaagatgaaatacaaaatg 30001161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 31950891 - 31950817
Alignment:
Q  182 attgaatgggctatgtccgaacttctaaggcatccaagagtgatgaaaaatcttcaagatgagatacaaaatgtg 256  Q
    ||||||||||| ||||| |||||  ||||||||||||  |||||||| || |||||| ||||| || ||||||||    
T  31950891 attgaatgggccatgtctgaactcttaaggcatccaaatgtgatgaagaaacttcaaaatgagctagaaaatgtg 31950817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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