View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_low_91 (Length: 248)

Name: NF7863_low_91
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_low_91
NF7863_low_91
[»] chr1 (11 HSPs)
chr1 (9-248)||(47716665-47716902)
chr1 (15-248)||(47744429-47744657)
chr1 (9-248)||(47711914-47712151)
chr1 (9-248)||(47758812-47759049)
chr1 (59-226)||(6524857-6525024)
chr1 (103-226)||(6503455-6503578)
chr1 (103-226)||(6511075-6511198)
chr1 (105-226)||(6498136-6498257)
chr1 (94-226)||(47774500-47774632)
chr1 (102-220)||(6515504-6515622)
chr1 (141-208)||(47770639-47770706)
[»] chr5 (4 HSPs)
chr5 (105-226)||(27369196-27369317)
chr5 (105-248)||(28874930-28875071)
chr5 (86-248)||(28829324-28829484)
chr5 (105-248)||(28860360-28860501)
[»] scaffold0341 (2 HSPs)
scaffold0341 (103-226)||(5137-5260)
scaffold0341 (103-226)||(12756-12878)


Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 47716902 - 47716665
Alignment:
Q  9 agatggacatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggactagtgattgcgatcaaaa 108  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  47716902 agatgaacatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggacaagtgattgcgatcaaaa 47716803  T
Q  109 ggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttggttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  47716802 ggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagtttgactacttggttt 47716703  T
Q  209 ttgtctagaaggaagagagaaagattgcttgtctatgaat 248  Q
    ||||||||||||||  |||||||||||||| |||||||||    
T  47716702 ttgtctagaaggaa--gagaaagattgcttttctatgaat 47716665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 248
Target Start/End: Complemental strand, 47744657 - 47744429
Alignment:
Q  15 acatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggactagtgattgcgatcaaaaggttgt 114  Q
    ||||||| ||||||||||   || ||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  47744657 acatcactttcttcatca---aaatacttattatacagaaatgaaatatatttgcagggtatactcgccggtggacaagtgattgcggtcaaaaggttgt 47744561  T
Q  115 caacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttggtttttgtct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  47744560 caacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttggtttttgtct 47744461  T
Q  215 agaaggaagagagaaagattgcttgtctatgaat 248  Q
    ||||||||  ||||||||||||||||||||||||    
T  47744460 agaaggaa--gagaaagattgcttgtctatgaat 47744429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 47712151 - 47711914
Alignment:
Q  9 agatggacatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggactagtgattgcgatcaaaa 108  Q
    ||||| ||||||||||||||||| ||||  | ||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||  ||||||    
T  47712151 agatgaacatcacattcttcatctttaacattctttttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaaaa 47712052  T
Q  109 ggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttggttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  47712051 ggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttagactacttggttt 47711952  T
Q  209 ttgtctagaaggaagagagaaagattgcttgtctatgaat 248  Q
    ||||||||||||||  |||||||||||||| |||||||||    
T  47711951 ttgtctagaaggaa--gagaaagattgcttatctatgaat 47711914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 47759049 - 47758812
Alignment:
Q  9 agatggacatcacattcttcatcattaaagtacttattatacacaaatgaaatatatttacagggtatactcgccggtggactagtgattgcgatcaaaa 108  Q
    ||||| ||||||||||||||||| ||||  | ||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||  ||||||    
T  47759049 agatgaacatcacattcttcatctttaacattcttgttatacacaaatgaaatatatttgcagggtatacttgccggtggacaagtcattgcagtcaaaa 47758950  T
Q  109 ggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttggttt 208  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47758949 ggttgtcaacaaattcaggacagggggatgttgaatttaagaatgaagtgcttttagtcgctaagcttcaacatcgaaatttagttcgactacttggttt 47758850  T
Q  209 ttgtctagaaggaagagagaaagattgcttgtctatgaat 248  Q
    |||||| |||||||  |||||||||||||||| |||||||    
T  47758849 ttgtctggaaggaa--gagaaagattgcttgtttatgaat 47758812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 59 - 226
Target Start/End: Original strand, 6524857 - 6525024
Alignment:
Q  59 aatatatttacagggtatactcgccggtggactagtgattgcgatcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtg 158  Q
    ||||||||| ||||||| |||| ||  ||||| || |||||   ||||||||||||| |   |||| || ||||| ||| | |||||||||||||||||     
T  6524857 aatatattttcagggtagactccccaatggacaagagattggtgtcaaaaggttgtcgagggattctggccaaggagatttagaatttaagaatgaagta 6524956  T
Q  159 cttttagtcgctaagcttcgacatcgaaatttagttcgactacttggtttttgtctagaaggaagaga 226  Q
     ||||||| ||||| |||| ||||||||| |||||| | ||||||||||| ||| |||||||||||||    
T  6524957 gttttagtggctaaacttcaacatcgaaacttagttaggctacttggtttctgtatagaaggaagaga 6525024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 6503578 - 6503455
Alignment:
Q  103 tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactact 202  Q
    |||||||||| ||||  ||||| |||||||| |||   || ||||||||||||||| ||||||| ||||| |||| |||  ||||| ||||| || ||||    
T  6503578 tcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaaatctagttagattact 6503479  T
Q  203 tggtttttgtctagaaggaagaga 226  Q
     |||||||| ||||||||||||||    
T  6503478 cggtttttgcctagaaggaagaga 6503455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 6511198 - 6511075
Alignment:
Q  103 tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactact 202  Q
    |||||||||| ||||  ||||| |||||||| ||| | || ||||||||||||||  ||||||| ||||| |||| ||| |||||||||||  || ||||    
T  6511198 tcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagtatttttagtggctaaacttcaacaccgaaatttagtaagattact 6511099  T
Q  203 tggtttttgtctagaaggaagaga 226  Q
     ||||| || ||||||||||||||    
T  6511098 cggtttctgcctagaaggaagaga 6511075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 6498257 - 6498136
Alignment:
Q  105 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttg 204  Q
    |||||||||||||  | ||| |||||||| |||   || ||||||||||| || ||||| || |||||||||| ||| |||||||||||| ||||||| |    
T  6498257 aaaaggttgtcaatgagttcgggacaaggagattcggagtttaagaatgaggtacttttggtggctaagcttcaacaccgaaatttagttagactactcg 6498158  T
Q  205 gtttttgtctagaaggaagaga 226  Q
    |||| |  ||||||||||||||    
T  6498157 gtttctcactagaaggaagaga 6498136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 226
Target Start/End: Original strand, 47774500 - 47774632
Alignment:
Q  94 tgattgcgatcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagt 193  Q
    |||||||| ||||||| ||||| | | |||| |  ||||| ||| | |||||||| |||||||| |||||||| || || |||| |||||||||||||||    
T  47774500 tgattgcggtcaaaagattgtccaaagattctgaccaaggagatgtggaatttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatttagt 47774599  T
Q  194 tcgactacttggtttttgtctagaaggaagaga 226  Q
    | | |||||||||||  || ||||||| |||||    
T  47774600 taggctacttggtttcagtttagaagggagaga 47774632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 220
Target Start/End: Complemental strand, 6515622 - 6515504
Alignment:
Q  102 atcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactac 201  Q
    ||||||||||| ||||  ||||| |||||||| ||| | || ||||||||||| ||| ||||  | ||||| |||| ||| |||||||||||| || |||    
T  6515622 atcaaaaggttatcaatgaattctggacaaggagatctagagtttaagaatgaggtgtttttcctggctaaacttcaacaccgaaatttagttagattac 6515523  T
Q  202 ttggtttttgtctagaagg 220  Q
    | ||||| || ||||||||    
T  6515522 tcggtttctgcctagaagg 6515504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 47770639 - 47770706
Alignment:
Q  141 gaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttggttt 208  Q
    |||||||| ||||||||  | ||||| || ||||||| |||||||||||||||| |||| ||||||||    
T  47770639 gaatttaaaaatgaagtattattagtagccaagcttcaacatcgaaatttagttagacttcttggttt 47770706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 105 - 226
Target Start/End: Complemental strand, 27369317 - 27369196
Alignment:
Q  105 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttg 204  Q
    |||||||||||||||||||| |  ||||| ||| |||| ||||| |||||||| |||||||| || || |||| |||||||||| ||||| | |||||||    
T  27369317 aaaaggttgtcaacaaattctgaccaaggagatgttgagtttaaaaatgaagtacttttagtagccaaacttcaacatcgaaatctagttaggctacttg 27369218  T
Q  205 gtttttgtctagaaggaagaga 226  Q
    |||| ||||||||||| |||||    
T  27369217 gtttctgtctagaagggagaga 27369196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 28875071 - 28874930
Alignment:
Q  105 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttg 204  Q
    ||||||||||| |  ||||| || ||||| ||||| |||||||||||||||||||||||| | || || |||| ||| || ||||| ||| |||||||||    
T  28875071 aaaaggttgtccatgaattctggccaaggagatatagaatttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttggttagactacttg 28874972  T
Q  205 gtttttgtctagaaggaagagagaaagattgcttgtctatgaat 248  Q
    |||||  | | |||||  |||||||||| | |||||||||||||    
T  28874971 gttttactattgaagg--gagagaaagactacttgtctatgaat 28874930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 248
Target Start/End: Complemental strand, 28829484 - 28829324
Alignment:
Q  86 tggactagtgattgcgatcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcga 185  Q
    ||||| |||||||||| | |||||||| || | |||||| || ||||| ||| | ||||||||||| ||||| | ||| || || || |||| ||| |||    
T  28829484 tggacaagtgattgcggtgaaaaggttatccataaattctggtcaaggagatctagaatttaagaacgaagtacgtttggtggccaaacttcaacaccga 28829385  T
Q  186 aatttagttcgactacttggtttttgtctagaaggaagagagaaagattgcttgtctatgaat 248  Q
    ||||||||| |||| |||||||||  | | |||||  |||||||||||| |||||||||||||    
T  28829384 aatttagttagactccttggttttactgttgaagg--gagagaaagattacttgtctatgaat 28829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 248
Target Start/End: Complemental strand, 28860501 - 28860360
Alignment:
Q  105 aaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactacttg 204  Q
    ||||||||||| |  ||||| || ||||| ||||  || ||||||||||||||||||||| | || || |||| ||| || ||||||||| |||||||||    
T  28860501 aaaaggttgtccattaattctggccaaggagatagagagtttaagaatgaagtgcttttaatggccaaacttcaacaccggaatttagttagactacttg 28860402  T
Q  205 gtttttgtctagaaggaagagagaaagattgcttgtctatgaat 248  Q
    |||||  | | |||||  |||||||||| | |||||||||||||    
T  28860401 gttttactattgaagg--gagagaaagactacttgtctatgaat 28860360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 5260 - 5137
Alignment:
Q  103 tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactact 202  Q
    |||||||||| ||||  ||||| |||||||| |||   || ||||||||||||||| ||||||| ||||| |||| |||  ||||| ||||| || ||||    
T  5260 tcaaaaggttatcaatgaattctggacaaggagattcagagtttaagaatgaagtgtttttagttgctaaacttcaacacagaaatctagttagattact 5161  T
Q  203 tggtttttgtctagaaggaagaga 226  Q
     |||||||| ||||||||||||||    
T  5160 cggtttttgcctagaaggaagaga 5137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 226
Target Start/End: Complemental strand, 12878 - 12756
Alignment:
Q  103 tcaaaaggttgtcaacaaattcaggacaaggggatattgaatttaagaatgaagtgcttttagtcgctaagcttcgacatcgaaatttagttcgactact 202  Q
    |||||||||| ||||  ||||| |||||||| ||| | || ||||||||||||||  ||||||| ||||| |||| ||| |||||||||||  || ||||    
T  12878 tcaaaaggttatcaatgaattccggacaaggagatctagagtttaagaatgaagta-ttttagtggctaaacttcaacaccgaaatttagtaagattact 12780  T
Q  203 tggtttttgtctagaaggaagaga 226  Q
     ||||| || ||||||||||||||    
T  12779 cggtttctgcctagaaggaagaga 12756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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