View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7863_low_95 (Length: 243)
Name: NF7863_low_95
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7863_low_95 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 58 - 225
Target Start/End: Original strand, 34658454 - 34658622
Alignment:
| Q |
58 |
attttgtttggtttatttggttgaggatttcatgactcaagtgaactgtatttggttttgaggatttcatgactataatcaaaa-ttacttaaattttat |
156 |
Q |
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| T |
34658454 |
attttgtttggtttatttggttgaggatttcatgactcaagtgaactgtatttggttttgaggatttcatgactctaatcaaaaattacttaaattttat |
34658553 |
T |
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| Q |
157 |
cctaaaaagtgttcattttgaaactgttttatttgggatggtggtattatgggcagtgaacgttcccta |
225 |
Q |
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| T |
34658554 |
cctaaaaagtgttcattttgaaactgttttatttgggatggtagtattatgggcagtgaacgttcccta |
34658622 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 34658361 - 34658414
Alignment:
| Q |
18 |
aggagtgttcgttgaagagaatatttcaaatatgacaaggattttgtttggttt |
71 |
Q |
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| T |
34658361 |
aggagtgttcgttgaagagaatatttcaattatgacaaggatgttgtttggttt |
34658414 |
T |
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