View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7863_low_99 (Length: 241)

Name: NF7863_low_99
Description: NF7863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7863_low_99
NF7863_low_99
[»] chr4 (4 HSPs)
chr4 (1-238)||(16898993-16899230)
chr4 (1-238)||(18347508-18347745)
chr4 (62-188)||(51701101-51701232)
chr4 (182-227)||(51701385-51701430)
[»] chr3 (1 HSPs)
chr3 (1-238)||(13236746-13236983)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-225)||(198277-198501)
[»] scaffold1079 (1 HSPs)
scaffold1079 (37-238)||(1-202)
[»] chr1 (1 HSPs)
chr1 (1-122)||(33420473-33420594)
[»] chr2 (1 HSPs)
chr2 (105-238)||(23053452-23053585)
[»] chr6 (1 HSPs)
chr6 (71-141)||(26345819-26345889)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 16898993 - 16899230
Alignment:
Q  1 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16898993 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 16899092  T
Q  101 ttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16899093 ttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcc 16899192  T
Q  201 tctggcattacggcctttaccacaatgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  16899193 tctggcattacggcctttaccacaatgatgctgtccat 16899230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 18347508 - 18347745
Alignment:
Q  1 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18347508 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 18347607  T
Q  101 ttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18347608 ttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcc 18347707  T
Q  201 tctggcattacggcctttaccacaatgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  18347708 tctggcattacggcctttaccacaatgatgctgtccat 18347745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 51701101 - 51701232
Alignment:
Q  62 gacaaatgtgtgcatttctattagggtcgtat----tcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtata 157  Q
    |||||||||||||||||| |||||||||||||    ||| |||||||| || |||||||||||||| |||||||    |||||||||||||||| |||||    
T  51701101 gacaaatgtgtgcatttcaattagggtcgtatatattcgttagttacgttttgaccatatatgtctatttcattcttacgaaaatcaattttacagtata 51701200  T
Q  158 gacgcttatgacct-ccccctctatgccctgc 188  Q
    ||| ||||||| || |||||||||||||||||    
T  51701201 gacacttatgatctcccccctctatgccctgc 51701232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 51701385 - 51701430
Alignment:
Q  182 gccctgcggtaatgattcctctggcattacggcctttaccacaatg 227  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||    
T  51701385 gccctgcggtaaagattcctctggcattacggcctttaacacaatg 51701430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 13236983 - 13236746
Alignment:
Q  1 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236983 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 13236884  T
Q  101 ttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13236883 ttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcc 13236784  T
Q  201 tctggcattacggcctttaccacaatgatgatgtccat 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  13236783 tctggcattacggcctttaccacaatgatgctgtccat 13236746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 198501 - 198277
Alignment:
Q  1 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 100  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |    
T  198501 ccaattatagcccctctgggatgtaaaatatatctcttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattctatgg 198402  T
Q  101 ttacgattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcc 200  Q
    ||||||||| |||| |||||||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  198401 ttacgattctaccagatatgtctttttgattccgtcgaaaatctattttacggtataggcgcttatgacctccccctctatgccatgcggtaatgattcc 198302  T
Q  201 tctggcattacggcctttaccacaa 225  Q
    ||||| |||||| ||||||||||||    
T  198301 tctggaattacgacctttaccacaa 198277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1079 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: scaffold1079
Description:

Target: scaffold1079; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 1 - 202
Alignment:
Q  37 ttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtc 136  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||| ||||||||||||||||||||| ||||    
T  1 ttctcaccatccccatagtgtatgagacaaatgtatgcatttcgattagggtcgtattctatggttacgattctaccatatatgtctttttcatttcgtc 100  T
Q  137 gaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctggcattacggcctttaccacaatgatgatgtcc 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  101 gaaaatcaattttacggtatagacgcttatgacctccccctctatgccttgcggtaatgattcctctggcattacgacctttaccacaacgatgctgtcc 200  T
Q  237 at 238  Q
    ||    
T  201 at 202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 33420473 - 33420594
Alignment:
Q  1 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagacaaatgtgtgcatttctattagggtcgtattcgatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33420473 ccaattatagcccctctggggtgtaaaatatatcttttctcaccatccccatagtgtatgagataaatgtgtgcatttctattagggtcgtattcgatag 33420572  T
Q  101 ttacgattcgaccatatatgtc 122  Q
    ||||||||||||||||||||||    
T  33420573 ttacgattcgaccatatatgtc 33420594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 105 - 238
Target Start/End: Complemental strand, 23053585 - 23053452
Alignment:
Q  105 gattcgaccatatatgtctttttcattacgtcgaaaatcaattttacggtatagacgcttatgacctccccctctatgccctgcggtaatgattcctctg 204  Q
    |||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  23053585 gattcgactatatatgtctttttcattccgtagaaaatcaattttacggtatagacgcttatgacctctccctctatgccctgtggtaacgattcctctg 23053486  T
Q  205 gcattacggcctttaccacaatgatgatgtccat 238  Q
    ||||||| |||||||||||| ||||| |||||||    
T  23053485 gcattacagcctttaccacagtgatgctgtccat 23053452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 26345889 - 26345819
Alignment:
Q  71 gtgcatttctattagggtcgtattcgatagttacgattcgaccatatatgtctttttcattacgtcgaaaa 141  Q
    ||||||||| |||||||| || |||  |||||||||||| | ||||||||||||||| ||| |||||||||    
T  26345889 gtgcatttcgattagggttgttttcactagttacgattcaatcatatatgtcttttttattccgtcgaaaa 26345819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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