View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7864_low_1 (Length: 733)
Name: NF7864_low_1
Description: NF7864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7864_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 636; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 9 - 680
Target Start/End: Complemental strand, 23333266 - 23332595
Alignment:
| Q |
9 |
ttaattaactcaaaaaggtttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaatattaggcgatggttttaatttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333266 |
ttaattaactcaaaaaggtttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaatattaggcgatggttttaatttg |
23333167 |
T |
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| Q |
109 |
gctacttttggaatgtaatgctacgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagtt |
208 |
Q |
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| T |
23333166 |
gctacttttggaaagtaatgctatgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgtcaagtt |
23333067 |
T |
|
| Q |
209 |
aggatcaagactgtcaattatcattcatgctatgtagttagtcggttcattagtgggcattgcactgttttggtatgttgattggaactaaccgtgtcat |
308 |
Q |
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| T |
23333066 |
aggatcaagactgtcaattatcattcatgctatgtagttagtcggttcatttgtgggcattgcactgttttggtatgttgattggaactaaccgtgtcat |
23332967 |
T |
|
| Q |
309 |
gtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttcgccaaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaa |
408 |
Q |
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| T |
23332966 |
gtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttcgccaaggaatatggtttgcatgttgatgattatgtcatgttgcgtgatccaaa |
23332867 |
T |
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| Q |
409 |
cagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggtctatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggt |
508 |
Q |
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| T |
23332866 |
cagaaacatgttcaaggtcaaggtccacgtgaaaaatggcaaggtttatctgcgggatggttgggctgagctgaagggtttctataaggtagatcgtggt |
23332767 |
T |
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| Q |
509 |
gcgtgggtcaccctgacttatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctc |
608 |
Q |
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| T |
23332766 |
gcgtgggtcaccctgacgtatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttcttcctc |
23332667 |
T |
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| Q |
609 |
ccatgtcgaaaatgattgtccaacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccacatat |
680 |
Q |
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| T |
23332666 |
ccatgtcgaaaatgattgtcccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccatatat |
23332595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 359 - 453
Target Start/End: Original strand, 10955074 - 10955166
Alignment:
| Q |
359 |
aaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
453 |
Q |
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| T |
10955074 |
aaggaatatggtttgcacgttgatgactatgtcat--tgcgtgatcctaacaagaacatgttcgaggttaaggtccacaagaagaagggcaaggt |
10955166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 717
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
675 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
717 |
Q |
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| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 675 - 717
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
675 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
717 |
Q |
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| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 2027759 - 2027692
Alignment:
| Q |
386 |
tatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
453 |
Q |
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| T |
2027759 |
tatgtcattttgcgtgatccaaacaagaacatgtttgaggttaaagttcacaagaaaaatggcaaggt |
2027692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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