View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7864_low_4 (Length: 403)
Name: NF7864_low_4
Description: NF7864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7864_low_4 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 403
Target Start/End: Original strand, 6527459 - 6527854
Alignment:
| Q |
8 |
ggacatcatactcgacatcaaagtatcatttctcttcctaagaacacccttcaaatcaaaattttaaaaaccaaattaaacatcaaacctacaagaacac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527459 |
ggacatcatactcgacatcaaagtatcatttctcttcctaagaacacccttcaaatcaaaattttaaaaaccaaattaaacatcaaacctacaagaacac |
6527558 |
T |
|
| Q |
108 |
cgaatcatagttcaactactttaaaccattaaaaccaggacaaaattgcattggaataactgtacagtagacaatgtcagttcaaaattcaacggattaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6527559 |
tgaatcatagttcaactactttaaaccattaaaaccaggacaaaattgcattggaataactgtacaatagacaatgtcagttcaaaattcaacggattaa |
6527658 |
T |
|
| Q |
208 |
accgtccagtgtggtttttaaaacattgcttcaaagaaaacacatagtatatcttatggtgaaaatgagcactcacatacatttcatgaccctgttcacc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527659 |
accgtccagtgtggtttttaaaacattgcttcaaagaaaacacatagtaaatcttatggtgaaaatgagcactcacatacatttcatgaccctgttcacc |
6527758 |
T |
|
| Q |
308 |
attctcagcaattttcggagctttattactcccactcttaaaagcagcattccctctcccacctctcccacccggcaacaacaacgccttctgtcc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6527759 |
attctcagcaattttcggagctttattactcccactcttaaaagcagcattccctctcccacctctcccacccggcaacaacaacgccttctgtcc |
6527854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University