View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7864_low_7 (Length: 329)
Name: NF7864_low_7
Description: NF7864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7864_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 312
Target Start/End: Complemental strand, 52384816 - 52384516
Alignment:
| Q |
13 |
aatatgaaatacaaattgcaaggt-ctagttccatatacccttgattctttcttttatttttctggtgaaactttggaaaatagaaatacataaccatca |
111 |
Q |
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| T |
52384816 |
aatatgaaatacaaattgcaaggtactagttccatatacccttgattctttcttttatttttctggtgaaactttggaaaatagaaatacataaccatca |
52384717 |
T |
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| Q |
112 |
cttagttaaattttgattgaacagaaatagaataagtggacaatnnnnnnntgcaaggaatctaccggatactgcaacctcgccgtaaccctttaagggc |
211 |
Q |
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| T |
52384716 |
cttagttaaattttgattgaacagaaatagaataagtggacaataaaaaaatgcaaggaatctaccggatactgcaacctcgccgtaaccctttaagggc |
52384617 |
T |
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| Q |
212 |
cgcaatatttcaacaattccacggaaatggaatttttagcctgaacaagttatcttcaggcttcggatgtggcacatcctatccacccatgctgcagaag |
311 |
Q |
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| T |
52384616 |
cgcaatatttcaacaattccacggaaatggaatttttagcctgaacaagttatcttcaggcttcggatgtggcacatcctatccacccatgctgcagaag |
52384517 |
T |
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| Q |
312 |
g |
312 |
Q |
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| T |
52384516 |
g |
52384516 |
T |
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