View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7864_low_9 (Length: 303)

Name: NF7864_low_9
Description: NF7864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7864_low_9
NF7864_low_9
[»] chr4 (9 HSPs)
chr4 (1-261)||(49577411-49577671)
chr4 (1-51)||(4289928-4289978)
chr4 (1-51)||(39598958-39599008)
chr4 (5-50)||(52249379-52249424)
chr4 (5-51)||(2588344-2588390)
chr4 (5-51)||(5650594-5650640)
chr4 (20-51)||(55911343-55911374)
chr4 (5-51)||(16497563-16497609)
chr4 (5-51)||(16497754-16497800)
[»] chr2 (5 HSPs)
chr2 (1-51)||(36536231-36536281)
chr2 (1-51)||(42975706-42975756)
chr2 (5-51)||(44673371-44673417)
chr2 (6-50)||(25438500-25438544)
chr2 (5-49)||(37154692-37154736)
[»] scaffold0325 (1 HSPs)
scaffold0325 (1-51)||(8549-8599)
[»] chr1 (1 HSPs)
chr1 (1-51)||(47523877-47523927)
[»] chr6 (2 HSPs)
chr6 (1-50)||(18133752-18133801)
chr6 (5-41)||(13425552-13425588)
[»] chr5 (3 HSPs)
chr5 (1-50)||(10916952-10917001)
chr5 (1-51)||(5240651-5240701)
chr5 (5-51)||(7992241-7992287)
[»] chr3 (5 HSPs)
chr3 (1-41)||(7227292-7227332)
chr3 (5-51)||(9454826-9454872)
chr3 (5-51)||(32130366-32130412)
chr3 (1-51)||(50064074-50064124)
chr3 (5-51)||(53208539-53208585)
[»] chr8 (8 HSPs)
chr8 (5-51)||(23033585-23033631)
chr8 (1-51)||(29168357-29168406)
chr8 (5-50)||(3277701-3277746)
chr8 (1-51)||(3376179-3376227)
chr8 (5-51)||(1548347-1548393)
chr8 (5-51)||(3117913-3117959)
chr8 (5-51)||(34784352-34784398)
chr8 (5-50)||(20900977-20901022)
[»] chr7 (6 HSPs)
chr7 (5-51)||(12859079-12859125)
chr7 (1-37)||(5465538-5465574)
chr7 (21-51)||(19780961-19780991)
chr7 (1-51)||(46082360-46082410)
chr7 (5-50)||(19886776-19886821)
chr7 (5-50)||(32775375-32775420)
[»] scaffold0302 (1 HSPs)
scaffold0302 (1-50)||(17295-17344)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 49577411 - 49577671
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaagggattaatgtctctcctggtcagtcgcgtgggtatcctcaggtaggctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49577411 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaagggattaatgtctctcctggtcagtcgcgtgggtatcctcaggtaggctg 49577510  T
Q  101 acttcttggtcagccaccataggctcgctcggtcgttataggaactcattcttgtgcttttggagtactgaccttacgtttccgtatagacccctagtta 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  49577511 acttcttggtcggccaccataggctcgctcggtcgttataggaactcattcttgtgcttttggagtactgaccttacgtttccgtacagacccctagtta 49577610  T
Q  201 gaatagagacttgcagtaaaatgttgttgatatgatcccattcggaattgtaattcggtct 261  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  49577611 gaatagagacttgcattaatatgttgttgatatgatcccattcggaattgtaattcggtct 49577671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4289928 - 4289978
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4289928 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 4289978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 39598958 - 39599008
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  39598958 agagttgagcgaaatagatagagaaaatagagggaaaacagaggaaccaag 39599008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 52249379 - 52249424
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||    
T  52249379 ttgagagaaatatatagggaaaatagagggaaaacagaggaaccaa 52249424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 2588344 - 2588390
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||    
T  2588344 ttgagagaaatatatagggaaaatagagggaaaacaggggaaccaag 2588390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 5650594 - 5650640
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||    
T  5650594 ttgagagaaatatatagggaaaatagagggaaaacaaaggaaccaag 5650640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 55911374 - 55911343
Alignment:
Q  20 agagaaaatagagggaaaacagaggaaccaag 51  Q
    ||||||||||||||||||||||||||||||||    
T  55911374 agagaaaatagagggaaaacagaggaaccaag 55911343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 16497563 - 16497609
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||||    
T  16497563 ttgagagaaatatatagggaaaatagagggaaaacaggggagccaag 16497609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 16497754 - 16497800
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||||    
T  16497754 ttgagagaaatatatagggaaaatagagggaaaacaggggagccaag 16497800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 36536231 - 36536281
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||||    
T  36536231 agagttgagaggaatagatagagaaaatagaggaaaaacagaggaaccaag 36536281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42975706 - 42975756
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||||| | | |||||||||||||| ||||| |||||||||||    
T  42975706 agagttgagagaaaaaaacagagaaaatagaggaaaaacggaggaaccaag 42975756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 44673417 - 44673371
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||  |||||||||    
T  44673417 ttgagagaaatatatagggaaaatagagggaaaacaagggaaccaag 44673371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 25438544 - 25438500
Alignment:
Q  6 tgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    ||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  25438544 tgagagaaatatatagggaaaatagagggaaaacaggggagccaa 25438500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 37154692 - 37154736
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaacca 49  Q
    |||||||||||  ||||||||||||||||| ||||| ||||||||    
T  37154692 ttgagagaaatgtatagagaaaatagagggtaaacaaaggaacca 37154736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 8599 - 8549
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||||||    
T  8599 agagttgagtgaaataaatagagaaaatagaggaaaaacagaggaaccaag 8549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 47523927 - 47523877
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||||||||| | |||||||||| |||||||||||||||||||    
T  47523927 agagttgagagaaatagagatagaaaatagacggaaaacagaggaaccaag 47523877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18133752 - 18133801
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  18133752 agagttgacagaaataaatagagaaaatagaggaaaaacagaggaaccaa 18133801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 13425552 - 13425588
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacag 41  Q
    |||||||||||| |||| |||||||||||||||||||    
T  13425552 ttgagagaaatatatagggaaaatagagggaaaacag 13425588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10916952 - 10917001
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||||||||||| |||||||||||||||| |||||| |||||||||    
T  10916952 agagttgagagaaatatatagagaaaatagaggaaaaacataggaaccaa 10917001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 5240701 - 5240651
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||||||||||||  |||||||||| |||||| ||||||||||    
T  5240701 agagttgagagaaatagatagtaaaaatagaggaaaaacataggaaccaag 5240651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 7992241 - 7992287
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||    
T  7992241 ttgagagaaatatatagggaaaatagagggaaaacaggggaaccaag 7992287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7227332 - 7227292
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacag 41  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  7227332 agagttgagagaaatagatagagaaaatagaggaaaaacag 7227292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 9454872 - 9454826
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||||    
T  9454872 ttgagagaaatatatagggaaaattgagggaaaacagaggaaccaag 9454826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 32130412 - 32130366
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||    
T  32130412 ttgagagaaatatatagggaaaatagagggaaaacaaaggaaccaag 32130366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 50064124 - 50064074
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| ||| | |||||| ||||||| |||||||||||||||||    
T  50064124 agagttgagagatataaacagagaatatagaggaaaaacagaggaaccaag 50064074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 53208539 - 53208585
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||| ||| |||||    
T  53208539 ttgagagaaatatatagggaaaatagagggaaaacaggggagccaag 53208585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 23033631 - 23033585
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||    
T  23033631 ttgagagaaatatatagggaaaatagagggaaaacaggggaaccaag 23033585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 29168357 - 29168406
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  29168357 agagttgagagagatagatagagaaaatag-ggggaaacagaggaaccaag 29168406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 3277746 - 3277701
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||||||| |||| ||||||||||||||||||| ||||||||    
T  3277746 ttgagagaaatatatagggaaaatagagggaaaacaggggaaccaa 3277701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 3376179 - 3376227
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||| ||||||||||||||  |||||| |||||||||||||||||    
T  3376179 agagttgagataaatagatagagaa--tagaggaaaaacagaggaaccaag 3376227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 1548393 - 1548347
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||  |||| ||||||||||||||||||| |||||||||    
T  1548393 ttgagagaaatgtatagggaaaatagagggaaaacaggggaaccaag 1548347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 3117959 - 3117913
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||| ||| |||||||||    
T  3117959 ttgagagaaatatatagggaaaatagagggaaagcaggggaaccaag 3117913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 34784352 - 34784398
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||| ||||||||||| |||||||||    
T  34784352 ttgagagaaatatatagggaaaatatagggaaaacaggggaaccaag 34784398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 20901022 - 20900977
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||||||| | || ||||||||||||||||||| ||||||||    
T  20901022 ttgagagaaatatacagggaaaatagagggaaaacaggggaaccaa 20900977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 12859079 - 12859125
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||| |||| ||||||||||||||||||| |||||||||    
T  12859079 ttgagagaaatatatagggaaaatagagggaaaacaggggaaccaag 12859125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5465538 - 5465574
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaa 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  5465538 agagttgagagaaatagatagtgaaaatagagggaaa 5465574  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 51
Target Start/End: Original strand, 19780961 - 19780991
Alignment:
Q  21 gagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||||||||||||||||||||||||    
T  19780961 gagaaaatagagggaaaacagaggaaccaag 19780991  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46082360 - 46082410
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaag 51  Q
    |||||||||| ||||| | |||||||||||||| |||||||||||| ||||    
T  46082360 agagttgagataaataaacagagaaaatagaggaaaaacagaggaaacaag 46082410  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 19886821 - 19886776
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  19886821 ttgagagaaatatatagggaaaatagagggaaaacaggggagccaa 19886776  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 32775420 - 32775375
Alignment:
Q  5 ttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||||||| |||| ||||||||||||||||||| ||| ||||    
T  32775420 ttgagagaaatatatagggaaaatagagggaaaacaggggagccaa 32775375  T

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Target: scaffold0302 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 17344 - 17295
Alignment:
Q  1 agagttgagagaaatagatagagaaaatagagggaaaacagaggaaccaa 50  Q
    |||||||||||||||||| ||||||||||||  ||| ||| |||||||||    
T  17344 agagttgagagaaatagacagagaaaatagaaagaatacataggaaccaa 17295  T

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