View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_high_1 (Length: 818)
Name: NF7865_high_1
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 49 - 477
Target Start/End: Complemental strand, 44783369 - 44782943
Alignment:
| Q |
49 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
148 |
Q |
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| T |
44783369 |
ctgatgaagcaatatctatcaatattatagtaaattttttgcaagtgtaaactgatacgagaatcttgttaaaaagtaatatcttgttttgtttgggtat |
44783270 |
T |
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| Q |
149 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaacctatgttgaactgacaattgatgtttactttgttttt |
248 |
Q |
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| T |
44783269 |
caaatttatgaagaaataagctattttagcttaactatttatatttatcttaaagtctctaac-tatgttgaactgacaattgatgtttactttgttttt |
44783171 |
T |
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| Q |
249 |
gggannnnnnnnncctttgtttgacatttcctccctatgctcgtattgcgattcatcgtaagcggttgaaattttaggttcataatcttctcttcttaaa |
348 |
Q |
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| T |
44783170 |
gggatttttttt-cctttgtttgacatttcctccctatgctcgtattgcgattcatcgtaagcggttgaaattttaggttcataatcttctcttcttaaa |
44783072 |
T |
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| Q |
349 |
tgaaactttttaccggttgttgaaaacatgtttggcattaatagactattagttgtatcagcaagaaatacatgaaatgtgagacttatatggatcattc |
448 |
Q |
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| T |
44783071 |
tgaaactttttaccggttgttgaaaacatgtttggcattaatagactattagttgtatcagcaagaaatacatgaaatgtgagacttgtatggatcattc |
44782972 |
T |
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| Q |
449 |
atttctccatccgtctatatttttccttt |
477 |
Q |
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| T |
44782971 |
atttctccatccgtctatatttttccttt |
44782943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 488 - 802
Target Start/End: Complemental strand, 44782885 - 44782571
Alignment:
| Q |
488 |
attgtatatcattttatattagaaaacacgttgaatgaatattttatatggagctactcatcttgataaccaaaaacatgtgtcttttactaacatattc |
587 |
Q |
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| T |
44782885 |
attgtatatcattttatattagaaaacacgttgaatgaatattttatatggagctactcatcttgataaccaaaaacatgtgtcttttactaacatattc |
44782786 |
T |
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| Q |
588 |
aacattatgtacatgccttgttgaagtagttagtgataccagttaatataaatttgagataactacatgggagaatatatttttgtcatacataatgtgt |
687 |
Q |
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| T |
44782785 |
aacactatgtacatgccttgttgaagtagttagtgataccagttaatataaatttgagataactacatgggagaatatatttttgtcatacataatgtgt |
44782686 |
T |
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| Q |
688 |
tagactacttggaaacatgttttaaaatacaatataagacttaatttatacaagactcgtcgttcatgtgatggaaagagacatcaatggttagaaatta |
787 |
Q |
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| T |
44782685 |
tagactacttagaaacatgttttaaaatacaatataagacttaatttatacaagactcgtcgttcatgcgatggaaagagacatcaatggttagaaatta |
44782586 |
T |
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| Q |
788 |
ttaagttgttagttg |
802 |
Q |
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| T |
44782585 |
ttaagttgttagttg |
44782571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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