View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_high_4 (Length: 590)
Name: NF7865_high_4
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 37059016 - 37058458
Alignment:
| Q |
19 |
acctaagtcactaggaatccagccactaagagagtttgtgccaaaactaatattttttagagtagaaatatttcctagagattgtggaattgtaccatag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37059016 |
acctaagtcactaggaatccagccactaagagagtttgtgccaaaactaatattttttagagtagaaatatttcctagagattgtggaattgtaccatag |
37058917 |
T |
|
| Q |
119 |
aaactattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaattctgcttacaatcttgtttgatgacaaatcaagaattt |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058916 |
aagctattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaattctgcttacaatcttgtttgatgacaaatcaagaattt |
37058817 |
T |
|
| Q |
219 |
gaagctcatctaaattggtaagatttgaaggaaacatcattccttcaaatctgttggaactcatatttagaactctcaaattatatagattggtaatttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37058816 |
gaagctcatctaaattggtaagatttgaaggaaacatgattccttcaaatctgttggaactcatatttagaactctcaaattatagagattggtaatttg |
37058717 |
T |
|
| Q |
319 |
ctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgttacctatataagggcttaagttacctgagagtccgaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058716 |
ctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgttacctatataagggcttaagttacctgagagtccgaag |
37058617 |
T |
|
| Q |
419 |
cctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgcaaggagatgaattatggatccaagaggataatgggg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37058616 |
cctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgcaaggagatgaattatggatccaagaggataatgggg |
37058517 |
T |
|
| Q |
519 |
gaggagaagtgttattattgcttaactgagattttaatgagattaaggcttctttgtct |
577 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37058516 |
gaggagaagtgttattattgcttaactgagattttaataagattaaggcttctttgtct |
37058458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 19 - 577
Target Start/End: Complemental strand, 37066492 - 37065936
Alignment:
| Q |
19 |
acctaagtcactaggaatccagccactaagagagtttgtgccaaaactaatattttttagagtagaaatatttcctagagattgtggaattgtaccatag |
118 |
Q |
| |
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|||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37066492 |
acctaagtcattaggaatccagccactaagag--ttggtgccaaaactaatattttttagagtagaaatatttcctagagattgtggaattgtaccatag |
37066395 |
T |
|
| Q |
119 |
aaactattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaattctgcttacaatcttgtttgatgacaaatcaagaattt |
218 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37066394 |
aagctattctttccaagttttaagacctgcagcattttcaagctgctgatgtgttcaggaattctgcttacaatcttgtttgatgacaaatcaagaattt |
37066295 |
T |
|
| Q |
219 |
gaagctcatctaaattggtaagatttgaaggaaacatcattccttcaaatctgttggaactcatatttagaactctcaaattatatagattggtaatttg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37066294 |
gaagctcatctaaattggtaagatttgaaggaaacatgattccttcaaatctgttggaactcatatttagaactctcaaattatagagattggtaatttg |
37066195 |
T |
|
| Q |
319 |
ctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgttacctatataagggcttaagttacctgagagtccgaag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37066194 |
ctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgttacctatataagggcttaagttacctgagagtccgaag |
37066095 |
T |
|
| Q |
419 |
cctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgcaaggagatgaattatggatccaagaggataatgggg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37066094 |
cctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgcaaggagatgaattatggatccaagaggataatgggg |
37065995 |
T |
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| Q |
519 |
gaggagaagtgttattattgcttaactgagattttaatgagattaaggcttctttgtct |
577 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37065994 |
gaggagaagtgttattattgcttaactgagattttaataagattaaggcttctttgtct |
37065936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 41908628 - 41908570
Alignment:
| Q |
295 |
caaattatatagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgca |
353 |
Q |
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||||||||||| |||||||||||| | ||||||||||||||||| | ||||||||||| |
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| T |
41908628 |
caaattatataaattggtaatttggttaggaatgaatcctgtgagtttgttatcctgca |
41908570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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