View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_high_9 (Length: 330)
Name: NF7865_high_9
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 35696304 - 35696607
Alignment:
| Q |
20 |
atcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcct |
119 |
Q |
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| T |
35696304 |
atcacaacaatgtcgatgctagcacctcccttccaactcctagaaatcaacgtcatatcagcacaagacctcgcacccgtttctaaatcaatcaaagcct |
35696403 |
T |
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| Q |
120 |
atgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgt |
219 |
Q |
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| T |
35696404 |
atgcagttgcatggctcaatccagaacgtaaacttaccacccaagcagaccctcatggtcataacaaccctacctggaatgaaaaatttgttttccgcgt |
35696503 |
T |
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| Q |
220 |
cgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcat |
319 |
Q |
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| T |
35696504 |
cgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatgttctcattggaactgtcgctgttcat |
35696603 |
T |
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| Q |
320 |
ctca |
323 |
Q |
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|||| |
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| T |
35696604 |
ctca |
35696607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
194 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
293 |
Q |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
294 |
ttctcattggaac |
306 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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