View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7865_low_10 (Length: 385)

Name: NF7865_low_10
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7865_low_10
NF7865_low_10
[»] chr2 (1 HSPs)
chr2 (76-378)||(8568290-8568578)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 76 - 378
Target Start/End: Complemental strand, 8568578 - 8568290
Alignment:
Q  76 taaaccaaacatcattatttaagaaacaaaacacattatttgtcatttcttatttaaacacataatctttttaatgaaatnnnnnnnnnnnnntagagat 175  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||    
T  8568578 taaacaaaacatcattatttaagaaacaaaacacattatttgtcatttcttatttaaacacataatctttttaatgaaa-----aaaaaaaaatagagat 8568484  T
Q  176 ttaaaggagaaagaaaacgaaaccttctgggatggaaagaaggggttgaaggggttgaagagaacaatcacaatgacaaggaggacaagaagaagaaaca 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  8568483 ttaaaggagaaagaaaacgaaaccttctgggatggaaagaaggggttgaag---------agaacaatcacaatgacaaggaggacaagaagaagaaaca 8568393  T
Q  276 gaactaagagtgtcattgagtgcccaaaacaaaggtggtcctgcaagataacatgttagacatattcccataatccaaaacaaaactttgaatgctctct 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8568392 gaactaagagtgtcattgagtgcccaaaacaaaggtggtcctgcaagataacatgttagacatattcccataatccaaaacaaaactttgaatgctcttt 8568293  T

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