View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_low_12 (Length: 330)
Name: NF7865_low_12
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 36475886 - 36476210
Alignment:
| Q |
19 |
ttgaattctgatgaatttgcgcatatacggagaataaattcctaagaacatttttcgtggcgcctcatattattttctaatttgttctattttacaggtt |
118 |
Q |
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| T |
36475886 |
ttgaattctgatgaatttgcgcatatacggagaataaattcctaagaacatttttcgtggcgcctcatattattttctaatttgttctattttacaggtt |
36475985 |
T |
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| Q |
119 |
cagtttctagttcttgtgcaaaatttggttcattgttgttagcacttgcagccacacgttcacatacaaatcattattaacgacacttgaggaacaacac |
218 |
Q |
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| T |
36475986 |
cagtttctagttcttgtgcaaaatttggttcattgttgttagcacttgcagccacacgttcacatacaaatcattattaacgacacttgaggaacaacac |
36476085 |
T |
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| Q |
219 |
tctgcaccaaatcagctgctctcctcaagact-------------gatcctcattctcccaaatttttcagtttattttccaccaaattccccacatggt |
305 |
Q |
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| T |
36476086 |
tctgcaccaaatcagctgctctcctcaaaactgcagtggaatttcgatcctcattctcccaaatttttcagtttattttccaccaaattccccacatggt |
36476185 |
T |
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| Q |
306 |
tgctgcaaattaattcgtcttctga |
330 |
Q |
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|||||||||| |||||||||||||| |
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| T |
36476186 |
tgctgcaaatcaattcgtcttctga |
36476210 |
T |
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