View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_low_14 (Length: 309)
Name: NF7865_low_14
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_14 |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 6 - 293
Target Start/End: Complemental strand, 21608628 - 21608341
Alignment:
| Q |
6 |
ctagattattctcaaatgggatggtcactaaagttgtatatcttttcaaactctgtcttgtctttagccaaccaatggaagagtaatgaagcatttctat |
105 |
Q |
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| T |
21608628 |
ctagtttattctcaaatgggatggtcactaaagttgtatatcttttcaaactctgtcttgtctttagccaaccaatggaagagtaatgaagcatttctat |
21608529 |
T |
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| Q |
106 |
gttgaattgtcggaaaattaatagccatccatggagtcaatgttacattgattttggtgccaacttcatgcattttcccctatttgcatgttgtatcata |
205 |
Q |
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| T |
21608528 |
gttgaattgtcggaaaattaatagccatccatggagtcaatgttacattgatattggtgccaacttcatgcattttcccctatttgcatgttttatcata |
21608429 |
T |
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| Q |
206 |
tagtagtgaataatttttatcttctgattcaagaagaaacacagactgctacttatatttttgtatatacattcacacaccctatctg |
293 |
Q |
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| T |
21608428 |
tagtagtgaataatttttatcttctgattcaagaagaataacagactgctacttatatttttgtatatacattcacacaccctatctg |
21608341 |
T |
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Target: scaffold0318 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 9520 - 9458
Alignment:
| Q |
67 |
ctttagccaaccaatggaagagtaatgaagcatttctatgttgaattgtcggaaaattaatag |
129 |
Q |
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| T |
9520 |
ctttagcaaaccaatggaagggtaatgaaggatatatttgttgcattgtcggaaaatgaatag |
9458 |
T |
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