View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_low_15 (Length: 254)
Name: NF7865_low_15
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 37 - 240
Target Start/End: Complemental strand, 26342036 - 26341833
Alignment:
| Q |
37 |
agtcatcaaaatcgaagtctccatctgcttcaattttgagaatacaaataaccagtctaaatacaaagcatgcctagccagactccaacacgtagcagaa |
136 |
Q |
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| T |
26342036 |
agtcatcaaaatccaagtctccatccgcttcaattttgtgaatacaaataaccagtctgaatacaaaacatgcctagccagactccaacacgtagcagaa |
26341937 |
T |
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| Q |
137 |
atagggactcaagaaatactgctcaggtcggacttaaaagtagtgatttctcaaataaatagggaatacaaggctatgggtcaaaagatgcaaagatatt |
236 |
Q |
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| T |
26341936 |
atagggactcaagaaatactgctcaagtcggacttaaaagtagtgatttctcaaataaatagggaatacaaggctatgggtcaaaagatgcaaagatatt |
26341837 |
T |
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| Q |
237 |
tgtg |
240 |
Q |
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|||| |
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| T |
26341836 |
tgtg |
26341833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 26348704 - 26348539
Alignment:
| Q |
8 |
ggggccagagtcttattgaaaaaatacgaa----gtcatcaaaatcgaagtctccatctgcttcaattttgagaatacaaataaccagtctaaatacaaa |
103 |
Q |
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|||||||||||||||||||||||| | || | |||||||||| |||||| | || |||||||||| || |||||||||||| ||| |||| |
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| T |
26348704 |
ggggccagagtcttattgaaaaaaaaaaaaaaaaggcatcaaaatccaagtcttcctcaacttcaattttatgagtacaaataaccaaatgaaa--caaa |
26348607 |
T |
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| Q |
104 |
gcatgcctagccagactccaacacgtagcagaaatagggactcaagaaatactgctcaggtcggactt |
171 |
Q |
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| T |
26348606 |
gcatgcctatcttgactccaacacgtagcataaatagggactcaataaataccgcttaggtaggactt |
26348539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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