View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_low_18 (Length: 238)
Name: NF7865_low_18
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_18 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27439929 - 27439694
Alignment:
| Q |
1 |
actgtttagacttcagatggagtaatcatgatttgtagataacannnnnnnnctaggcagatttgtatagataagttattatatcataaatatatttcaa |
100 |
Q |
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| T |
27439929 |
actgtttagacttcagatggagtaatcatgatttgtagataacattttttttctaggcagattagta--gataagttattatatcataaatatatttcaa |
27439832 |
T |
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| Q |
101 |
aggattgatgcatttagtcacttttaataataaaatttgcaaaaagcactagcatggtggggttggggaaatcaacatccagcattcgtttatcagtttg |
200 |
Q |
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| T |
27439831 |
aggattgatgcatttagtcacttttaataataaaatttgcaaaaagcactagcatggtagggttggggaaatcaacatccagcattcgtttatcagtttg |
27439732 |
T |
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| Q |
201 |
gacttggagcctatctaaatcatcaaaaccgtgatatt |
238 |
Q |
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| T |
27439731 |
gacttggagcctatctaaatcatcaaaaccgtgatatt |
27439694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 183
Target Start/End: Complemental strand, 27443461 - 27443371
Alignment:
| Q |
94 |
atttcaaaggattgatgcatttagtcacttttaataataaaatt-tgcaaaaagcactagcatggtggggttggggaaatcaacatccagc |
183 |
Q |
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| T |
27443461 |
atttccaaggaatgatgcatttagtcactttcatcaataaaaatgtgaaaaaagcattagtatggtggggttggaggaatcaacatccagc |
27443371 |
T |
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