View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_low_2 (Length: 687)
Name: NF7865_low_2
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_2 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 126 - 672
Target Start/End: Complemental strand, 27668321 - 27667793
Alignment:
| Q |
126 |
ttgctttaaccatgttggtttacattttctttctcgtagacaacgtaaatggtcttggccttttgatcctcgcctttcaactccacacccaaatcattta |
225 |
Q |
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| T |
27668321 |
ttgctttaaccatgttggtttccattttctttctcgtagacaacgtaaatggtcttagccttttgatcctcgcctttcaactccacacccaaatcattta |
27668222 |
T |
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| Q |
226 |
tcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgtttgatttatggttcatttttcatacttccaacaatgatgaa |
325 |
Q |
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| T |
27668221 |
tcttgactccgtcaacatcactaacctcaatactgaagccgttgattta------------------tggttcatttttcatacttccaacaatgatgaa |
27668140 |
T |
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| Q |
326 |
tgacctacttcatgcagtgaccttgaggttacggttctgtagtttggaaaagagaatatcaccattgaaaatatgatcttgtcctcgtttacacaagaag |
425 |
Q |
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| T |
27668139 |
tgacctacttcatgcagtgaccttggggttacggttctgtagtttggaaaagagaatatcaccattgaaaatatgatcctgtccccgtttacacaagaag |
27668040 |
T |
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| Q |
426 |
ccacaacgtaactatgatagagctgaaataaaggtaatcagtggatttagcaacaacaatgatgttgaaattagaattagtgctgagagggatagcgtac |
525 |
Q |
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| T |
27668039 |
ccacaacgtaactatgatagagctgaaataaaggtaatcagtggatttagcaacaacaatgatgttgaaattagaattagtgctgagagggatagcagac |
27667940 |
T |
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| Q |
526 |
tcatgcaaattggatcgtaattggcccccacctagataatcatcaacaatgtcgttgtaattttcttctacatatattttgtttctaataatttacctcc |
625 |
Q |
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| T |
27667939 |
tcatgcaaattggatcgtaattggcccccacctagataatcatcaacaatgtcgttgtaattttcttttacatatattttgtttctaataatttacctcc |
27667840 |
T |
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| Q |
626 |
atagatagtacttataaataatgtatagaattactcctcattaaatt |
672 |
Q |
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| T |
27667839 |
atagatagttcttataaataatgtatagaattactcctcattaaatt |
27667793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 27668515 - 27668417
Alignment:
| Q |
16 |
atctcaaaaaactaacgttactccgataattcgagattcgtcattcaaacaagctctttgcacctttgttgaagtctttgcatggcatatcattcaagca |
115 |
Q |
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| T |
27668515 |
atctcaaaaaactaacgttactccgataatttgagattcgtcattcaaacaagctcttt--acatttgttgaagcttttgcatggcatatcattcaagca |
27668418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 185 - 321
Target Start/End: Original strand, 27668773 - 27668909
Alignment:
| Q |
185 |
cttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgt |
284 |
Q |
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| T |
27668773 |
cttttgatacccacctttcaactccacactccaaccatttaccttgactcctccaacatcactaacctcaataccgaagcccttgatttaacggccatat |
27668872 |
T |
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| Q |
285 |
ttgatttatggttcatttttcatacttccaacaatga |
321 |
Q |
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| T |
27668873 |
ttgatttatggttcatatttcatactcacaacaatga |
27668909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 27673541 - 27673693
Alignment:
| Q |
178 |
tcttggccttttgatcctcgcctttcaactccacacccaaatcatttatcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacg |
277 |
Q |
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|||| |||||||||| | | ||||||||||| |||||| || |||||||||||||||||||||||| |||||||||||||| |||| | || | |||| |
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| T |
27673541 |
tcttagccttttgatacccacctttcaactcaacaccccaagcatttatcttgactccgtcaacataactaacctcaataccgaagcccttaacttaata |
27673640 |
T |
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| Q |
278 |
gccatgtttgatttatggttcatttttcatacttccaacaatgatgaatgacc |
330 |
Q |
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| T |
27673641 |
gccacgtttgattcatcgttcatttttcatactcccaacaatgatgaacgacc |
27673693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 225 - 304
Target Start/End: Original strand, 8954 - 9033
Alignment:
| Q |
225 |
atcttgactccgtcaacatcactaacctcaatactgaagtcgttgatttaacggccatgtttgatttatggttcattttt |
304 |
Q |
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| T |
8954 |
atcttgattccgttaacatcaccaaccttaataccaaagccgttaatttaacggccacgtttgatttatcgtttattttt |
9033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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