View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7865_low_3 (Length: 629)

Name: NF7865_low_3
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7865_low_3
NF7865_low_3
[»] chr5 (24 HSPs)
chr5 (359-541)||(4462521-4462703)
chr5 (359-544)||(6539761-6539946)
chr5 (387-545)||(1863092-1863250)
chr5 (415-505)||(14688741-14688831)
chr5 (399-512)||(41384737-41384848)
chr5 (395-501)||(19608772-19608878)
chr5 (427-511)||(6662084-6662169)
chr5 (377-528)||(844729-844880)
chr5 (395-512)||(41174301-41174418)
chr5 (417-512)||(15965817-15965912)
chr5 (482-521)||(22618740-22618779)
chr5 (507-545)||(16315656-16315694)
chr5 (416-493)||(9515541-9515617)
chr5 (507-544)||(35653379-35653416)
chr5 (415-503)||(38370542-38370630)
chr5 (456-512)||(41807225-41807281)
chr5 (505-544)||(5471331-5471370)
chr5 (508-546)||(31112385-31112423)
chr5 (435-488)||(26449260-26449313)
chr5 (443-499)||(1352386-1352442)
chr5 (491-546)||(6102919-6102975)
chr5 (508-544)||(7736410-7736446)
chr5 (399-479)||(19366976-19367055)
chr5 (507-543)||(39567852-39567888)
[»] chr3 (29 HSPs)
chr3 (364-545)||(36473083-36473264)
chr3 (435-546)||(31830153-31830264)
chr3 (417-505)||(39818843-39818931)
chr3 (417-501)||(43817123-43817207)
chr3 (360-512)||(9596266-9596418)
chr3 (388-500)||(14030285-14030397)
chr3 (442-545)||(30374674-30374777)
chr3 (385-494)||(31375487-31375596)
chr3 (359-512)||(44720819-44720972)
chr3 (426-505)||(34212002-34212081)
chr3 (415-537)||(23512711-23512833)
chr3 (388-500)||(35286536-35286648)
chr3 (426-542)||(42983900-42984016)
chr3 (384-494)||(48600595-48600703)
chr3 (417-479)||(1402016-1402078)
chr3 (433-543)||(15985277-15985387)
chr3 (359-501)||(31732083-31732225)
chr3 (426-500)||(42785505-42785579)
chr3 (360-501)||(43767251-43767392)
chr3 (490-545)||(42437683-42437739)
chr3 (466-510)||(49068721-49068765)
chr3 (507-546)||(12373096-12373135)
chr3 (453-512)||(25985425-25985484)
chr3 (432-512)||(37822902-37822978)
chr3 (507-545)||(6785761-6785799)
chr3 (448-490)||(8125767-8125809)
chr3 (507-545)||(44570510-44570548)
chr3 (466-512)||(44765172-44765218)
chr3 (462-514)||(48144134-48144186)
[»] chr4 (38 HSPs)
chr4 (361-545)||(14193812-14193992)
chr4 (361-545)||(26683602-26683786)
chr4 (382-544)||(53333514-53333676)
chr4 (384-493)||(38868827-38868936)
chr4 (392-544)||(51277946-51278099)
chr4 (393-512)||(24970949-24971068)
chr4 (415-505)||(31557457-31557547)
chr4 (395-501)||(37626937-37627043)
chr4 (420-546)||(50620631-50620757)
chr4 (359-511)||(24858588-24858741)
chr4 (417-498)||(41899097-41899178)
chr4 (394-500)||(36363567-36363672)
chr4 (390-512)||(43921090-43921212)
chr4 (448-505)||(34015939-34015996)
chr4 (426-499)||(36832827-36832899)
chr4 (455-512)||(48051730-48051787)
chr4 (507-544)||(51581581-51581618)
chr4 (510-544)||(31463420-31463454)
chr4 (415-500)||(13215440-13215525)
chr4 (435-500)||(23568002-23568067)
chr4 (359-494)||(4197216-4197352)
chr4 (502-546)||(11086376-11086420)
chr4 (387-493)||(37660043-37660148)
chr4 (490-541)||(48419163-48419215)
chr4 (507-546)||(47188789-47188828)
chr4 (426-500)||(4728108-4728182)
chr4 (427-512)||(40614808-40614894)
chr4 (466-512)||(46695672-46695718)
chr4 (455-544)||(4068360-4068449)
chr4 (490-546)||(12095048-12095105)
chr4 (506-543)||(19934588-19934625)
chr4 (476-541)||(20580401-20580466)
chr4 (393-505)||(23884712-23884824)
chr4 (507-544)||(54339061-54339098)
chr4 (420-540)||(5168542-5168662)
chr4 (468-512)||(20538021-20538065)
chr4 (361-413)||(29733950-29734002)
chr4 (437-489)||(56570782-56570834)
[»] chr7 (29 HSPs)
chr7 (364-516)||(31188733-31188885)
chr7 (361-539)||(5000297-5000476)
chr7 (361-545)||(27088264-27088449)
chr7 (361-545)||(27189852-27190037)
chr7 (384-524)||(23797679-23797819)
chr7 (385-503)||(35720939-35721057)
chr7 (393-541)||(43189794-43189943)
chr7 (422-535)||(30824916-30825031)
chr7 (388-493)||(4232722-4232827)
chr7 (393-545)||(7728541-7728693)
chr7 (379-501)||(23828892-23829017)
chr7 (359-494)||(28198028-28198163)
chr7 (359-456)||(36595338-36595435)
chr7 (388-510)||(5909068-5909190)
chr7 (420-501)||(39118249-39118333)
chr7 (394-493)||(34963386-34963485)
chr7 (437-520)||(43952468-43952551)
chr7 (444-511)||(44107020-44107087)
chr7 (430-503)||(8055022-8055096)
chr7 (507-545)||(19677103-19677141)
chr7 (417-499)||(38912900-38912982)
chr7 (507-544)||(24937939-24937976)
chr7 (435-512)||(35116895-35116972)
chr7 (455-512)||(47188475-47188532)
chr7 (443-501)||(38663681-38663739)
chr7 (442-544)||(46579010-46579112)
chr7 (508-545)||(1910191-1910228)
chr7 (387-512)||(12837900-12838025)
chr7 (508-544)||(31860251-31860287)
[»] chr6 (19 HSPs)
chr6 (396-545)||(3686792-3686941)
chr6 (359-544)||(10228273-10228457)
chr6 (394-512)||(8082455-8082572)
chr6 (359-543)||(21273633-21273818)
chr6 (402-545)||(31597486-31597630)
chr6 (384-512)||(24093779-24093906)
chr6 (426-505)||(32547697-32547776)
chr6 (415-501)||(31535682-31535772)
chr6 (399-501)||(342948-343050)
chr6 (388-542)||(23578756-23578910)
chr6 (360-401)||(3686722-3686763)
chr6 (398-501)||(2801274-2801378)
chr6 (507-542)||(26572201-26572236)
chr6 (452-494)||(1302505-1302547)
chr6 (459-505)||(18742220-18742266)
chr6 (507-544)||(19645945-19645982)
chr6 (432-501)||(30456802-30456871)
chr6 (507-555)||(28541894-28541941)
chr6 (426-478)||(29481897-29481949)
[»] chr2 (19 HSPs)
chr2 (361-517)||(41284588-41284744)
chr2 (393-546)||(752115-752268)
chr2 (359-512)||(12880045-12880198)
chr2 (394-505)||(40867915-40868027)
chr2 (393-512)||(41311691-41311810)
chr2 (418-511)||(4640205-4640298)
chr2 (393-493)||(32838648-32838748)
chr2 (439-545)||(9048914-9049018)
chr2 (399-505)||(40462087-40462193)
chr2 (446-544)||(40619897-40619994)
chr2 (416-493)||(19002765-19002842)
chr2 (507-544)||(1870462-1870499)
chr2 (490-544)||(36087433-36087488)
chr2 (417-499)||(41252757-41252840)
chr2 (405-499)||(38042447-38042540)
chr2 (420-494)||(39575490-39575564)
chr2 (442-512)||(45085678-45085748)
chr2 (358-499)||(43888840-43888981)
chr2 (444-512)||(44949266-44949334)
[»] chr1 (46 HSPs)
chr1 (362-503)||(15280480-15280621)
chr1 (393-545)||(42826538-42826692)
chr1 (388-542)||(2570958-2571111)
chr1 (548-615)||(15329120-15329187)
chr1 (388-545)||(29356890-29357046)
chr1 (393-535)||(1411675-1411816)
chr1 (384-545)||(36995197-36995359)
chr1 (387-512)||(28765521-28765646)
chr1 (419-521)||(34620608-34620710)
chr1 (420-528)||(25129829-25129937)
chr1 (395-501)||(27262752-27262858)
chr1 (416-501)||(49899041-49899126)
chr1 (462-544)||(1905706-1905788)
chr1 (415-501)||(2507007-2507093)
chr1 (402-472)||(10483271-10483341)
chr1 (395-505)||(42592687-42592797)
chr1 (359-489)||(44697991-44698121)
chr1 (415-501)||(49805977-49806063)
chr1 (388-512)||(35838552-35838674)
chr1 (359-494)||(48902865-48902999)
chr1 (435-528)||(17630294-17630388)
chr1 (388-545)||(51972040-51972198)
chr1 (507-544)||(2351344-2351381)
chr1 (442-511)||(48182112-48182180)
chr1 (417-499)||(8472358-8472437)
chr1 (386-493)||(1609706-1609812)
chr1 (490-544)||(8001715-8001770)
chr1 (507-546)||(27209842-27209881)
chr1 (388-459)||(31366773-31366844)
chr1 (507-546)||(44603737-44603776)
chr1 (446-488)||(49381064-49381107)
chr1 (415-501)||(2748574-2748660)
chr1 (507-545)||(4448976-4449014)
chr1 (384-458)||(15646908-15646982)
chr1 (429-499)||(39276713-39276783)
chr1 (507-544)||(14331785-14331822)
chr1 (455-512)||(26478091-26478148)
chr1 (507-548)||(32267953-32267994)
chr1 (507-544)||(43168089-43168126)
chr1 (507-544)||(44359793-44359830)
chr1 (429-505)||(5173068-5173144)
chr1 (502-546)||(8772353-8772397)
chr1 (392-440)||(12234949-12234997)
chr1 (361-512)||(18407419-18407567)
chr1 (461-501)||(32161582-32161622)
chr1 (386-450)||(47019027-47019091)
[»] chr8 (27 HSPs)
chr8 (365-539)||(42350352-42350526)
chr8 (393-544)||(471967-472117)
chr8 (386-521)||(14955209-14955344)
chr8 (394-546)||(44063070-44063222)
chr8 (393-540)||(17106162-17106307)
chr8 (385-505)||(44711469-44711589)
chr8 (394-544)||(29602023-29602169)
chr8 (359-479)||(20305671-20305791)
chr8 (359-479)||(21092304-21092424)
chr8 (384-512)||(34496881-34497009)
chr8 (360-501)||(42964747-42964887)
chr8 (393-501)||(44814056-44814162)
chr8 (505-545)||(3137506-3137546)
chr8 (452-512)||(38048853-38048912)
chr8 (453-544)||(36470656-36470747)
chr8 (388-501)||(38869085-38869199)
chr8 (386-479)||(42631679-42631772)
chr8 (486-546)||(45121049-45121110)
chr8 (505-545)||(18131297-18131337)
chr8 (426-512)||(37953248-37953334)
chr8 (507-544)||(4989884-4989921)
chr8 (491-539)||(40607389-40607438)
chr8 (384-512)||(15546659-15546787)
chr8 (490-545)||(20542477-20542533)
chr8 (415-463)||(26797869-26797917)
chr8 (361-501)||(32615798-32615938)
chr8 (393-512)||(44912176-44912296)
[»] scaffold0495 (1 HSPs)
scaffold0495 (359-544)||(4992-5176)
[»] scaffold0564 (1 HSPs)
scaffold0564 (426-505)||(3983-4062)
[»] scaffold0316 (1 HSPs)
scaffold0316 (426-505)||(3267-3346)
[»] scaffold0236 (1 HSPs)
scaffold0236 (415-493)||(20172-20250)
[»] scaffold0019 (1 HSPs)
scaffold0019 (400-461)||(48435-48496)
[»] scaffold0144 (1 HSPs)
scaffold0144 (507-545)||(39536-39574)
[»] scaffold0066 (1 HSPs)
scaffold0066 (465-546)||(34400-34481)
[»] scaffold0717 (1 HSPs)
scaffold0717 (476-512)||(5299-5335)
[»] scaffold0016 (1 HSPs)
scaffold0016 (417-521)||(79951-80055)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 359 - 541
Target Start/End: Original strand, 4462521 - 4462703
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4462521 aagggaaatgctaaccattgccccgagggcactagttaagaagttttaaaaggaagttttgtcttggaaatgatgcattcaagatattgaaagtttaaaa 4462620  T
Q  459 agtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaaga 541  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4462621 agtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaaga 4462703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 359 - 544
Target Start/End: Original strand, 6539761 - 6539946
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    |||| |||||||||| ||| |||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||    
T  6539761 aaggaaaatgctaactattgccctgatggcactagttaagaagtttaaaaatgaagttttgttttgaaaatgatgcattcaagacattgaaagtttaaaa 6539860  T
Q  459 agtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6539861 agtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 6539946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 387 - 545
Target Start/End: Original strand, 1863092 - 1863250
Alignment:
Q  387 gcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataa 486  Q
    ||||| |||||||||||||||||  || |||| |||||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||| |||    
T  1863092 gcacttgttaagaagtttaaaaaataaattttatcttggaaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaa 1863191  T
Q  487 attatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||||||| ||| ||| |||||| | |||||| ||||||||||| | |||||||||    
T  1863192 attatttctatatttgaatccttaactagtgccctaagggcattggtaaacaagaccct 1863250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 14688741 - 14688831
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||| |||  |||| ||||||||||||||||||||||| |||||||||||    
T  14688741 ttttgtcttagaaatgattcattcaacacattgaaagtttaaaaactaattttttttacataaaacttataaattatttttatttttaaat 14688831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 399 - 512
Target Start/End: Original strand, 41384737 - 41384848
Alignment:
Q  399 aagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatt 498  Q
    |||||||||||| |||||||||||| |||||||| || |||| || ||||||||||||||||||   |||| |  |||||||||||||||||||||||||    
T  41384737 aagtttaaaaagaaagttttgtcttagaaatgatccaatcaacacgttgaaagtttaaaaagta--tttttttttataaaacttataaattatttctatt 41384834  T
Q  499 tttaaattcttaac 512  Q
    ||| ||| ||||||    
T  41384835 tttgaatccttaac 41384848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 395 - 501
Target Start/End: Original strand, 19608772 - 19608878
Alignment:
Q  395 taagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttc 494  Q
    ||||||||| |||||||||  ||| |||||||| |  |  |||||| |||||||||  |||||||||||| |||||||||||||| |||| |||||||||    
T  19608772 taagaagttcaaaaaggaaactttatcttggaatttgtctattcaacacattgaaacattaaaaagtaactttttctacataaaaattatcaattatttc 19608871  T
Q  495 tattttt 501  Q
    |||||||    
T  19608872 tattttt 19608878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 427 - 511
Target Start/End: Original strand, 6662084 - 6662169
Alignment:
Q  427 aatgatgcattcaag-acattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaa 511  Q
    ||||||||||||||  ||||||||||||||| || |||| |||||||||| ||| |||||||||||||| |||||| ||| |||||    
T  6662084 aatgatgcattcaaacacattgaaagtttaataaataactttttctacatcaaatttataaattatttcaatttttgaatccttaa 6662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 528
Target Start/End: Complemental strand, 844880 - 844729
Alignment:
Q  377 taccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacata 476  Q
    |||||| |||||||| | |||||||||||||  || | || | | |||||| |  || |||||| |||||||||  ||||||||||||||||||  ||||    
T  844880 tacccttagggcacttgataagaagtttaaagtggtaattctattttggaagttgtgtattcaacacattgaaacattaaaaagtaacattttcatcata 844781  T
Q  477 aaacttataaattatttctatttttaaattcttaaccattgccctgagggca 528  Q
    ||| | || |||| |||| |||||||||| |||||| | |||||| ||||||    
T  844780 aaattcatcaattgtttccatttttaaatccttaacaagtgcccttagggca 844729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 395 - 512
Target Start/End: Complemental strand, 41174418 - 41174301
Alignment:
Q  395 taagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttc 494  Q
    ||||||| |||||  ||||||||| |||||||| |  |||||| || |||||||||  |||||||||||| || || |||||||| |||  |||||||||    
T  41174418 taagaagcttaaagtggaagttttatcttggaagttgtgcatttaacacattgaaatattaaaaagtaactttgtcaacataaaatttaacaattatttc 41174319  T
Q  495 tatttttaaattcttaac 512  Q
    | ||||| ||| ||||||    
T  41174318 tctttttgaatccttaac 41174301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 417 - 512
Target Start/End: Original strand, 15965817 - 15965912
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||||| |||||| |||||||||  |||| ||| ||||||| ||||| |||||||| ||||| | || |||||||||||||| |  |||||||||    
T  15965817 ttgtcttagaaatggtgcattcaatgcatttaaattttaaaatgtaactttttctacttaaaattcatcaattatttctatttgtgtattcttaac 15965912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 482 - 521
Target Start/End: Original strand, 22618740 - 22618779
Alignment:
Q  482 tataaattatttctatttttaaattcttaaccattgccct 521  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  22618740 tataaattatttctatttttaaatccttaaccattgccct 22618779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 545
Target Start/End: Original strand, 16315656 - 16315694
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  16315656 cttaaccattgccctgagggcaatggttagcaagaccct 16315694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 416 - 493
Target Start/End: Original strand, 9515541 - 9515617
Alignment:
Q  416 tttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    |||||||||||||| ||||||||||  |||||||| |||||||||| |  |||| ||||||||| |||| ||||||||    
T  9515541 tttgtcttggaaattatgcattcaatgcattgaaactttaaaaagt-attttttttacataaaatttatcaattattt 9515617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 35653379 - 35653416
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||||||||||||| |||||||||||||||    
T  35653379 cttaaccattgccctgagggcaatggttagcaagaccc 35653416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 415 - 503
Target Start/End: Original strand, 38370542 - 38370630
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaa 503  Q
    |||||||||| |||||||||||| ||  |||| ||  ||| ||||||||  |||||||| ||||| |||| ||||||||||||| ||||    
T  38370542 ttttgtcttgaaaatgatgcattgaatgcatttaagtttttaaaagtaaatttttctacgtaaaatttatcaattatttctattcttaa 38370630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 456 - 512
Target Start/End: Complemental strand, 41807281 - 41807225
Alignment:
Q  456 aaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||||||| |||||||||||||| |||  |||| ||||||||||||||| ||||||    
T  41807281 aaaagtaactttttctacataaaatttagtaattgtttctatttttaaatccttaac 41807225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 505 - 544
Target Start/End: Original strand, 5471331 - 5471370
Alignment:
Q  505 ttcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  5471331 ttcttaaccattgccctgagggcaccggttagcaagaccc 5471370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 546
Target Start/End: Complemental strand, 31112423 - 31112385
Alignment:
Q  508 ttaaccattgccctgagggcattggttagcaagacccta 546  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  31112423 ttaaccattgcccttagggcactggttagcaagacccta 31112385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 488
Target Start/End: Complemental strand, 26449313 - 26449260
Alignment:
Q  435 attcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaat 488  Q
    |||||| ||||||||| ||||||||| ||  |||||||||||||| ||||||||    
T  26449313 attcaaaacattgaaactttaaaaagaaattttttctacataaaatttataaat 26449260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 499
Target Start/End: Original strand, 1352386 - 1352442
Alignment:
Q  443 cattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattt 499  Q
    |||||||| ||||||| ||||| |||| ||| ||||| |||| ||||||||||||||    
T  1352386 cattgaaactttaaaatgtaactttttttacttaaaatttatcaattatttctattt 1352442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 491 - 546
Target Start/End: Original strand, 6102919 - 6102975
Alignment:
Q  491 tttctatttttaaattc-ttaaccattgccctgagggcattggttagcaagacccta 546  Q
    ||||||||| || |||| |||||||||||||| || ||| |||||||||||||||||    
T  6102919 tttctatttatagattccttaaccattgccctaagtgcactggttagcaagacccta 6102975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 544
Target Start/End: Original strand, 7736410 - 7736446
Alignment:
Q  508 ttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||||| |||||| |||||||||||||||    
T  7736410 ttaaccattgcccttagggcactggttagcaagaccc 7736446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 479
Target Start/End: Original strand, 19366976 - 19367055
Alignment:
Q  399 aagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaa 479  Q
    ||||||||| | ||| |||||||||| ||||   |||||||| | ||||||| ||||||||||||| |||||||| |||||    
T  19366976 aagtttaaagaagaaattttgtcttgaaaattgagcattcaataaattgaaactttaaaaagtaac-ttttctacttaaaa 19367055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 543
Target Start/End: Complemental strand, 39567888 - 39567852
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagacc 543  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  39567888 cttaatcattgccctgagggcaatggttagcaagacc 39567852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 364 - 545
Target Start/End: Complemental strand, 36473264 - 36473083
Alignment:
Q  364 aaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaa 463  Q
    ||||| |||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  36473264 aaatgttaaccattgccctaagggcactagttaagaagttaaaaaaggaagttttgtctaggaaatgatgcattcaagacattgaaagattaaaaagtaa 36473165  T
Q  464 cattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36473164 cattttctacataaaatttataaattatttctatttttaaattcttaaccattgccctgagggcatcggttagcaagaccct 36473083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 435 - 546
Target Start/End: Complemental strand, 31830264 - 31830153
Alignment:
Q  435 attcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggtt 534  Q
    |||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||||||| ||| ||| |||||| |  ||||| ||||||||||||    
T  31830264 attcaacacattgaaagtttaaaaagtaactttgtctacataaaacttgtaaattatttctatatttgaatccttaactagagccctaagggcattggtt 31830165  T
Q  535 agcaagacccta 546  Q
    | ||||||||||    
T  31830164 aacaagacccta 31830153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 505
Target Start/End: Complemental strand, 39818931 - 39818843
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    |||||||| ||||||||| ||||| ||||| || ||||||||||||||||||||||||| ||| ||||| |||||||||| ||||||||    
T  39818931 ttgtcttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacattttctacatgaaatttatagattatttctaattttaaat 39818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 43817123 - 43817207
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattttt 501  Q
    ||||||| |||||||||||||||| || || ||| |||||||  |||| |||||||||||||||||| |||||||||||||||||    
T  43817123 ttgtcttagaaatgatgcattcaacacgttaaaaatttaaaatttaactttttctacataaaacttacaaattatttctattttt 43817207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 360 - 512
Target Start/End: Original strand, 9596266 - 9596418
Alignment:
Q  360 agggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaa 459  Q
    |||||||||||||| | | | || |||||||| ||||||||| ||||||| |||  ||| |||| || |||||| |||||| ||  ||||| ||||||||    
T  9596266 agggaaatgctaacaagtgctcttagggcacttgttaagaagcttaaaaaagaaagtttatcttagagatgatgtattcaacaccatgaaactttaaaaa 9596365  T
Q  460 gtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
      ||| ||||| |||| ||| |||||| |||||||||||||| | ||||||||    
T  9596366 tgaactttttccacatcaaatttataatttatttctatttttgagttcttaac 9596418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 388 - 500
Target Start/End: Complemental strand, 14030397 - 14030285
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| ||||||||  ||||| | ||||||||||||||| | |||||||||||| || |||||| || ||||||||| ||||| ||| |||||||||  ||    
T  14030397 cacttgttaagaaacttaaagaagaagttttgtcttgggattgatgcattcaaaactttgaaacttaaaaaagtaatattttttacttaaaacttaacaa 14030298  T
Q  488 ttatttctatttt 500  Q
    |||||| ||||||    
T  14030297 ttatttttatttt 14030285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 442 - 545
Target Start/End: Original strand, 30374674 - 30374777
Alignment:
Q  442 acattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaaga 541  Q
    ||||| ||||||||||||||||| || |||| ||||||||| |||||||||||||| ||| |||  ||||  | |||||| ||||||||||||| ||| |    
T  30374674 acattaaaagtttaaaaagtaaccttatctatataaaacttgtaaattatttctatatttgaatctttaattaatgccctaagggcattggttaacaaca 30374773  T
Q  542 ccct 545  Q
    ||||    
T  30374774 ccct 30374777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 385 - 494
Target Start/End: Original strand, 31375487 - 31375596
Alignment:
Q  385 gggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttat 484  Q
    ||||||| ||| |||||| |||| | ||| |||| ||||||||||  || |||||| ||||||||| ||||||||| |||||||||||||||| | |||     
T  31375487 gggcacttgtttagaagtctaaataagaaattttttcttggaaattgtgtattcaacacattgaaactttaaaaaggaacattttctacataagatttac 31375586  T
Q  485 aaattatttc 494  Q
    |||| |||||    
T  31375587 aaataatttc 31375596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 512
Target Start/End: Original strand, 44720819 - 44720972
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | | || ||| |||||  |||||||||| || | | ||| |||||||||| ||||| |||||||||  |||| ||| ||| |||    
T  44720819 aagggaaatgctaacaagtgccttgaaggcacctgttaagaagtctagagaagaaattttgtcttgaaaatggtgcattcaatgcattaaaactttcaaa 44720918  T
Q  459 agtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||| ||||  |||||||| |||  ||||||||| ||||||| || ||||||    
T  44720919 agtaactttttgaacataaaatttaccaattatttccatttttagatccttaac 44720972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Original strand, 34212002 - 34212081
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    ||||||||| ||||| ||||| || ||||||||||||||| ||| ||||| ||| ||||| |||||||||| ||||||||    
T  34212002 aaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttctaattttaaat 34212081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 537
Target Start/End: Complemental strand, 23512833 - 23512711
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaacca 514  Q
    |||| |||||| |||  |||||||||||||||||||    ||||||||||||||||| ||||||| || | |||||||||||||||  |||  ||||| |    
T  23512833 ttttatcttgggaattgtgcattcaagacattgaaacaacaaaaagtaacattttctccataaaatttgtcaattatttctattttggaatctttaacaa 23512734  T
Q  515 ttgccctgagggcattggttagc 537  Q
     ||| || |||||||| ||||||    
T  23512733 gtgctcttagggcatttgttagc 23512711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 500
Target Start/End: Original strand, 35286536 - 35286648
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| |||||||||| |||| | ||||||||||||| | |  |||| |||||| ||||| ||| || |||| ||||| ||||||| ||||||||||  ||    
T  35286536 cacttgttaagaagtctaaagaagaagttttgtctttggatcgatgaattcaacacattaaaacttgaaaaggtaactttttctatataaaacttaagaa 35286635  T
Q  488 ttatttctatttt 500  Q
    |||||| ||||||    
T  35286636 ttatttttatttt 35286648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 542
Target Start/End: Original strand, 42983900 - 42984016
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagg 525  Q
    |||| ||||||| || ||||||||| ||||||||||||| ||  |||||||||| |||||||| ||||| |||||| |||  ||||| | ||  || |||    
T  42983900 aaataatgcatttaacacattgaaaatttaaaaagtaactttgactacataaaatttataaatcatttccatttttgaatcattaacaagtgttcttagg 42983999  T
Q  526 gcattggttagcaagac 542  Q
    ||| | |||||||||||    
T  42984000 gcacttgttagcaagac 42984016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 384 - 494
Target Start/End: Original strand, 48600595 - 48600703
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaactta 483  Q
    |||||||| ||| ||||||  ||||| |||  ||| ||||| |||| |||  ||||| ||||||||| ||||||||||||  |||||||| ||||| |||    
T  48600595 agggcacttgtttagaagtccaaaaaagaaactttttcttgaaaattatg--ttcaatacattgaaactttaaaaagtaattttttctacgtaaaattta 48600692  T
Q  484 taaattatttc 494  Q
    |||||||||||    
T  48600693 taaattatttc 48600703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 479
Target Start/End: Complemental strand, 1402078 - 1402016
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaa 479  Q
    |||||||||||||| |||||||||  |||||||| ||||||| ||||| |||||||| |||||    
T  1402078 ttgtcttggaaatggtgcattcaatgcattgaaactttaaaatgtaactttttctacttaaaa 1402016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 433 - 543
Target Start/End: Original strand, 15985277 - 15985387
Alignment:
Q  433 gcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattgg 532  Q
    |||||||| |||||||||  |||||||||||  ||||  |||||||| |||| |||||||||  ||||| |||  ||||||| || ||| |||||| | |    
T  15985277 gcattcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaattatttccttttttgaatctttaaccagtgtccttagggcacttg 15985376  T
Q  533 ttagcaagacc 543  Q
    |||||||||||    
T  15985377 ttagcaagacc 15985387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 501
Target Start/End: Complemental strand, 31732225 - 31732083
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | | ||||  ||||||||| |||||||  ||||| ||||||||| |||||| | |  || |||||| | |||||||  | ||||    
T  31732225 aagggaaatgctaacaagtgcccttggggcactagataagaagcctaaaatggaagttttatcttgggatttgtgtattcaacatattgaaacatcaaaa 31732126  T
Q  459 agtaacattttctacataaaacttataaattatttctattttt 501  Q
    || ||| ||||| |||| ||| |||| ||||||||| ||||||    
T  31732125 agcaactttttcaacatgaaagttatgaattatttccattttt 31732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 42785579 - 42785505
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttt 500  Q
    |||||||||||| |  ||||| ||||||||||| ||||  |||   |||||||||||||||||||||||||||||    
T  42785579 aaatgatgcatttattacattaaaagtttaaaatgtaatttttcaaacataaaacttataaattatttctatttt 42785505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 360 - 501
Target Start/End: Original strand, 43767251 - 43767392
Alignment:
Q  360 agggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaa 459  Q
    ||||||||| |||| | | |||| |||||| | | ||||| |||||||| | || |||||||||| || |  ||||||||| ||||| |||  | |||||    
T  43767251 agggaaatgttaacaagtgcccttagggcaattgataagaggtttaaaatgaaaattttgtcttgaaatttgtgcattcaacacattaaaacatcaaaaa 43767350  T
Q  460 gtaacattttctacataaaacttataaattatttctattttt 501  Q
    ||||  |||||||||||||| |||| |||| ||| |||||||    
T  43767351 gtaattttttctacataaaatttatcaattgtttatattttt 43767392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 545
Target Start/End: Complemental strand, 42437739 - 42437683
Alignment:
Q  490 atttctattttta-aattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||| || ||| |||||||||||||||||||||| |||||| |||||||||    
T  42437739 atttctatttgtagaatccttaaccattgccctgagggcactggttatcaagaccct 42437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 466 - 510
Target Start/End: Original strand, 49068721 - 49068765
Alignment:
Q  466 ttttctacataaaacttataaattatttctatttttaaattctta 510  Q
    ||||||||||||||||||| ||||||||||||||| |||| ||||    
T  49068721 ttttctacataaaacttatcaattatttctattttaaaatcctta 49068765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 546
Target Start/End: Original strand, 12373096 - 12373135
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagacccta 546  Q
    |||||||||||||||||||| | |||||||||||||||||    
T  12373096 cttaaccattgccctgagggaactggttagcaagacccta 12373135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 512
Target Start/End: Original strand, 25985425 - 25985484
Alignment:
Q  453 ttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||||  ||| ||||||| |||||| |||| |||||||||||||||||||| ||||||    
T  25985425 ttaaaaaacaactttttctatataaaagttatcaattatttctatttttaaatccttaac 25985484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 512
Target Start/End: Complemental strand, 37822978 - 37822902
Alignment:
Q  432 tgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||||||||| |||||||  |||||||||    |||| ||||| ||| ||||||||||||||||||||| |||| |||||    
T  37822978 tgcattcaagatattgaaacattaaaaagt----ttttttacattaaatttataaattatttctatttttgaatttttaac 37822902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 545
Target Start/End: Complemental strand, 6785799 - 6785761
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  6785799 cttaaccattgccctgagggcactggttagcaataccct 6785761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 448 - 490
Target Start/End: Original strand, 8125767 - 8125809
Alignment:
Q  448 aaagtttaaaaagtaacattttctacataaaacttataaatta 490  Q
    ||||||||| |||||||||| ||||||||||| ||||||||||    
T  8125767 aaagtttaataagtaacattatctacataaaatttataaatta 8125809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 545
Target Start/End: Original strand, 44570510 - 44570548
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||||||| ||||||| ||||||||||||||||    
T  44570510 cttaaccattgcccagagggcaatggttagcaagaccct 44570548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 44765172 - 44765218
Alignment:
Q  466 ttttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||||||||||| |||| |||||||| ||||||||||| ||||||    
T  44765172 ttttctacataaaagttattaattatttttatttttaaatccttaac 44765218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 514
Target Start/End: Original strand, 48144134 - 48144186
Alignment:
Q  462 aacattttctacataaaacttataaattatttctatttttaaattcttaacca 514  Q
    |||||||||||||||||| | ||||||||||||   |||||||| ||||||||    
T  48144134 aacattttctacataaaattcataaattatttcctcttttaaatacttaacca 48144186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 361 - 545
Target Start/End: Complemental strand, 14193992 - 14193812
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    ||||||||||||||||| ||||||| |    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  14193992 gggaaatgctaaccattgccctgagag----agttaagaagtttaaaaaggaagttttatctcggaaatgatgcattcaagacattgaaagtttaaaaag 14193897  T
Q  461 taacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14193896 taacattttctacataaaatttataaattatttttatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 14193812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 361 - 545
Target Start/End: Complemental strand, 26683786 - 26683602
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    |||||||||||| |||| |||| |||||||   ||||||||| ||||| ||||||||||||||| |||| |||||||||||||||||||| |||||||||    
T  26683786 gggaaatgctaatcattgccctcagggcaccgattaagaagtctaaaagggaagttttgtcttgaaaataatgcattcaagacattgaaaatttaaaaag 26683687  T
Q  461 taacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||| ||||||||||||||| |||||||||||||| |||||||||| |||||||||| || |||||||||||||||||||||||||    
T  26683686 taatattttctacataaaatttataaattatttccatttttaaatccttaaccattaccatgagggcattggttagcaagaccct 26683602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 382 - 544
Target Start/End: Complemental strand, 53333676 - 53333514
Alignment:
Q  382 tgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaact 481  Q
    |||||||||| |||||||||| ||||||| ||||| | | || ||||| |||||||||||| ||| ||||||||||||||||| |||||||||| ||| |    
T  53333676 tgagggcactggttaagaagtgtaaaaagaaagttctattttagaaataatgcattcaagatattaaaagtttaaaaagtaactttttctacatgaaatt 53333577  T
Q  482 tataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  53333576 tataaattatttttatttttaaattcttaaccattgtcctgaggacattggttagcaagaccc 53333514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 384 - 493
Target Start/End: Original strand, 38868827 - 38868936
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaactta 483  Q
    |||||||| |||||||| | |||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  38868827 agggcacttgttaagaaatctaaagaggaaattttgtcttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttttctacataaaactta 38868926  T
Q  484 taaattattt 493  Q
    ||||||||||    
T  38868927 taaattattt 38868936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 392 - 544
Target Start/End: Original strand, 51277946 - 51278099
Alignment:
Q  392 agttaagaagtttaaaaaggaagttttgtcttggaaatgatgca-ttcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaatta 490  Q
    |||||||||||||||||||||| |||| |||||||||||||| | || || |||||||||||||||||| |||  || |||||||||||||| |||||||    
T  51277946 agttaagaagtttaaaaaggaaattttatcttggaaatgatgtaatttaacacattgaaagtttaaaaattaaatttatctacataaaacttgtaaatta 51278045  T
Q  491 tttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||| ||| |||  ||||| | |||||| ||| |||| |||| ||||||||    
T  51278046 tttctatatttgaatctttaactagtgccctaaggacattagttaacaagaccc 51278099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 393 - 512
Target Start/End: Original strand, 24970949 - 24971068
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    ||||||||||||||| ||||| |||||||||| |||||||| ||| |  ||||||||||||||||||||||| |||||| ||| ||| || ||||||| |    
T  24970949 gttaagaagtttaaagaggaaattttgtcttgaaaatgatgtattaagcacattgaaagtttaaaaagtaaccttttctgcatgaaatttgtaaattact 24971048  T
Q  493 tctatttttaaattcttaac 512  Q
    ||||||||| ||| ||||||    
T  24971049 tctatttttgaatccttaac 24971068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 415 - 505
Target Start/End: Original strand, 31557457 - 31557547
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    |||| ||||| ||||||||| ||||| ||||| || ||||||||||||||| |||||| || ||||||||| |||||||||| ||||||||    
T  31557457 ttttttcttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacaatttctatatgaaacttatagattatttctaattttaaat 31557547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 395 - 501
Target Start/End: Original strand, 37626937 - 37627043
Alignment:
Q  395 taagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttc 494  Q
    |||||||||||||| ||||| |||||||||||  |  || |||||| ||||| |||  |||||||||||| |||||||||||||| |||| |||| ||||    
T  37626937 taagaagtttaaaagggaagctttgtcttggattttgtgtattcaacacatttaaacattaaaaagtaactttttctacataaaagttatcaattgtttc 37627036  T
Q  495 tattttt 501  Q
    |||||||    
T  37627037 tattttt 37627043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 420 - 546
Target Start/End: Original strand, 50620631 - 50620757
Alignment:
Q  420 tcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgcc 519  Q
    ||||||||||  |||||||||   |||||||   ||||||| ||| ||||||| |||||| ||   |||||||||  ||||| | | |||||||||||||    
T  50620631 tcttggaaattgtgcattcaacttattgaaatagtaaaaagcaactttttctatataaaatttcataattatttccttttttgattccttaaccattgcc 50620730  T
Q  520 ctgagggcattggttagcaagacccta 546  Q
    || ||||||||||||||||||||||||    
T  50620731 ctaagggcattggttagcaagacccta 50620757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 511
Target Start/End: Original strand, 24858588 - 24858741
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | | |||| | || ||| |||||||||| |||    |||  |||||||||||||||||||||||||  |||||||| |||||||    
T  24858588 aagggaaatgctaacaagttccctcaaggtacttgttaagaagtctaacgtagaaactttgtcttggaaatgatgcattcaatgcattgaaattttaaaa 24858687  T
Q  459 agtaa-cattttctacataaaacttataaattatttctatttttaaattcttaa 511  Q
    |||||   |||| || ||||||||||| |||||||| |||| || ||| |||||    
T  24858688 agtaatttttttttagataaaacttatcaattatttttattcttgaatccttaa 24858741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 417 - 498
Target Start/End: Original strand, 41899097 - 41899178
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatt 498  Q
    |||||||||||||| |||||||||  |||||||| ||||||| ||||| |||||||| ||||| | || |||||||||||||    
T  41899097 ttgtcttggaaatggtgcattcaatgcattgaaactttaaaatgtaactttttctacttaaaattcatcaattatttctatt 41899178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 394 - 500
Target Start/End: Original strand, 36363567 - 36363672
Alignment:
Q  394 ttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    |||| ||||||||| | ||| |||||| |||| | |||||||||||| |||||||||  || ||||||||  ||||||||||||| ||||  ||||||||    
T  36363567 ttaaaaagtttaaagaagaaattttgttttgggattgatgcattcaacacattgaaa-cttgaaaagtaattttttctacataaatcttaccaattattt 36363665  T
Q  494 ctatttt 500  Q
    |||||||    
T  36363666 ctatttt 36363672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 512
Target Start/End: Complemental strand, 43921212 - 43921090
Alignment:
Q  390 ctagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaatt 489  Q
    ||||||||||||||||||| || |  |||  |||||||||  ||||||||| ||||||||||   |||||||||| ||||| |||||||| | || |||     
T  43921212 ctagttaagaagtttaaaatgggaactttaccttggaaattgtgcattcaacacattgaaagaacaaaaagtaactttttcaacataaaattcatgaatc 43921113  T
Q  490 atttctatttttaaattcttaac 512  Q
    ||||||| |||| ||| ||||||    
T  43921112 atttctagttttgaatccttaac 43921090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 448 - 505
Target Start/End: Complemental strand, 34015996 - 34015939
Alignment:
Q  448 aaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    |||||| ||||| ||| ||||||||||||||| ||||||||||||| |||||||||||    
T  34015996 aaagttaaaaaaataatattttctacataaaatttataaattatttatatttttaaat 34015939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 426 - 499
Target Start/End: Complemental strand, 36832899 - 36832827
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattt 499  Q
    ||||||||||||||| ||||||||| || |||| | ||| |||||||||||||| |||||| ||||||||||||    
T  36832899 aaatgatgcattcaatacattgaaacttaaaaatg-aactttttctacataaaatttataatttatttctattt 36832827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 48051730 - 48051787
Alignment:
Q  455 aaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||||||| |||||||||||||| |||| |||||||||||||||| ||| ||||||    
T  48051730 aaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaac 48051787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 51581581 - 51581618
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51581581 cttaaccattgccctgagggcattggttagcaagaccc 51581618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 510 - 544
Target Start/End: Original strand, 31463420 - 31463454
Alignment:
Q  510 aaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||||||||||||||||||||||||||    
T  31463420 aaccattgccctgagggcattggttagcaagaccc 31463454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 415 - 500
Target Start/End: Original strand, 13215440 - 13215525
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttt 500  Q
    |||||||| |||| | |||||||||| | ||||||| || |||||||||  || ||||||||||| |||  |||||||||||||||    
T  13215440 ttttgtctcggaattaatgcattcaacatattgaaacttgaaaaagtaattttctctacataaaatttaccaattatttctatttt 13215525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 500
Target Start/End: Complemental strand, 23568067 - 23568002
Alignment:
Q  435 attcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttt 500  Q
    |||||| |||||||||  | |||||||||||||||||| |||||| |||| |||||||| ||||||    
T  23568067 attcaatacattgaaaaatcaaaaagtaacattttctatataaaagttatcaattatttttatttt 23568002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 359 - 494
Target Start/End: Complemental strand, 4197352 - 4197216
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaa-aaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaa 457  Q
    |||||||||| |||| | | ||||  ||| ||| ||| ||||||| ||| ||| || |||| ||||||||||  || |||||| || |||||| || |||    
T  4197352 aagggaaatggtaacaagtgcccttggggaacttgtttagaagttaaaagaagaaacttttttcttggaaattgtgtattcaacaccttgaaacttaaaa 4197253  T
Q  458 aagtaacattttctacataaaacttataaattatttc 494  Q
    || |||| |||||||||||||| |||||||| |||||    
T  4197252 aaataactttttctacataaaatttataaatcatttc 4197216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 502 - 546
Target Start/End: Original strand, 11086376 - 11086420
Alignment:
Q  502 aaattcttaaccattgccctgagggcattggttagcaagacccta 546  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||    
T  11086376 aaatccttaaccattgcccttagggcactggttagcaagacccta 11086420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 387 - 493
Target Start/End: Original strand, 37660043 - 37660148
Alignment:
Q  387 gcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaa-cattttctacataaaacttata 485  Q
    ||||| ||||||||||||||| ||||| || ||| |||||||| || ||||  | || |||||| ||||||||||||   ||||||||||||||  ||||    
T  37660043 gcacttgttaagaagtttaaagaggaaattatgttttggaaattatacatt--aaacgttgaaaatttaaaaagtaatttttttctacataaaatctata 37660140  T
Q  486 aattattt 493  Q
    ||||||||    
T  37660141 aattattt 37660148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 490 - 541
Target Start/End: Original strand, 48419163 - 48419215
Alignment:
Q  490 atttctatttttaaattc-ttaaccattgccctgagggcattggttagcaaga 541  Q
    |||||||||| || |||| ||||||| ||||||||||||||||||||||||||    
T  48419163 atttctatttgtagattccttaaccactgccctgagggcattggttagcaaga 48419215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 546
Target Start/End: Original strand, 47188789 - 47188828
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagacccta 546  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  47188789 cttaaccattgccctgatggcaatggttagcaagacccta 47188828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 500
Target Start/End: Complemental strand, 4728182 - 4728108
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttt 500  Q
    |||| ||| ||||||||||||||||   |||||| |||| |||| ||| ||||| |||| |||||||||||||||    
T  4728182 aaattatgtattcaagacattgaaataataaaaattaactttttttacgtaaaatttatcaattatttctatttt 4728108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 427 - 512
Target Start/End: Complemental strand, 40614894 - 40614808
Alignment:
Q  427 aatgatgcattcaagacattgaaagtttaaaaagtaacattttc-tacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||||||||  || ||||||||| ||||||||||||  ||||  ||||||||||||||| |||| || ||||||| ||| ||||||    
T  40614894 aatgatgcatcgaatacattgaaaatttaaaaagtaatttttttatacataaaacttatacattaattttatttttgaatccttaac 40614808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 466 - 512
Target Start/End: Original strand, 46695672 - 46695718
Alignment:
Q  466 ttttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||| ||||||||| ||||  ||||||||||||||||||||||||||    
T  46695672 ttttatacataaaaattatcgattatttctatttttaaattcttaac 46695718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 544
Target Start/End: Original strand, 4068360 - 4068449
Alignment:
Q  455 aaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||| ||||||||||| || |||  |||| ||||| ||||| ||| |||||| | |||||| |||||| | |||||||| ||||    
T  4068360 aaaaagtaactttttctacatagaatttaacaattgtttctttttttgaatccttaactagtgccctaagggcacttgttagcaaaaccc 4068449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 546
Target Start/End: Original strand, 12095048 - 12095105
Alignment:
Q  490 atttctatttttaaattc-ttaaccattgccctgagggcattggttagcaagacccta 546  Q
    |||||||||| || |||| ||||| ||||||| ||||||| |||||||||||||||||    
T  12095048 atttctatttgtagattccttaactattgccccgagggcactggttagcaagacccta 12095105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 506 - 543
Target Start/End: Original strand, 19934588 - 19934625
Alignment:
Q  506 tcttaaccattgccctgagggcattggttagcaagacc 543  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  19934588 tcttaaccattgccctgatggcaatggttagcaagacc 19934625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 541
Target Start/End: Original strand, 20580401 - 20580466
Alignment:
Q  476 aaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaaga 541  Q
    |||| |||| ||||||||||||||||||||||||||| | || | | || ||||| ||||||||||    
T  20580401 aaaagttatcaattatttctatttttaaattcttaacaaatgtcataagtgcatttgttagcaaga 20580466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 505
Target Start/End: Complemental strand, 23884824 - 23884712
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacat-aaaacttataaattat 491  Q
    ||||||||| ||||| | |||||||| |||| | | |||||||||||| || |||||| || ||||| |||  |||| ||||| ||||||||  ||||||    
T  23884824 gttaagaagcttaaagaagaagttttatcttaggattgatgcattcaaaactttgaaacttgaaaaa-taatcttttttacataaaaacttaccaattat 23884726  T
Q  492 ttctatttttaaat 505  Q
    ||||||||| ||||    
T  23884725 ttctattttaaaat 23884712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 54339098 - 54339061
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  54339098 cttaaccattgctctgagggcaatggttagcaagaccc 54339061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 420 - 540
Target Start/End: Original strand, 5168542 - 5168662
Alignment:
Q  420 tcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgcc 519  Q
    ||||||||||| |||||||||   ||||||| |||||||  |||  |||||||| ||||| | || |||||||||||||| |  ||||||||  | || |    
T  5168542 tcttggaaatggtgcattcaatgtattgaaattttaaaatataattttttctacttaaaattcatcaattatttctatttatgtattcttaaaaagtgtc 5168641  T
Q  520 ctgagggcattggttagcaag 540  Q
    |||||| |||| |||| ||||    
T  5168642 ctgaggccatttgttaacaag 5168662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 468 - 512
Target Start/End: Original strand, 20538021 - 20538065
Alignment:
Q  468 ttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||| ||||||| |||| |||||||| ||||||||||||||||||    
T  20538021 ttcttcataaaagttatcaattatttatatttttaaattcttaac 20538065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 29734002 - 29733950
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaa 413  Q
    ||||||||||||| | | |||| |||||||| |||||||||||||||| ||||    
T  29734002 gggaaatgctaacaagtcccctaagggcacttgttaagaagtttaaaatggaa 29733950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 489
Target Start/End: Complemental strand, 56570834 - 56570782
Alignment:
Q  437 tcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaatt 489  Q
    |||| ||||||||||| ||||||||||| |||| ||||||||| ||| |||||    
T  56570834 tcaacacattgaaagtataaaaagtaaccttttttacataaaatttaaaaatt 56570782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 8e-69; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 364 - 516
Target Start/End: Complemental strand, 31188885 - 31188733
Alignment:
Q  364 aaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaa 463  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31188885 aaatgctagtcattgccctgagggcactagttaagaagtttaaaaaggaagttttgtcttgaaaatgatgcattcaagacattgaaagtttaaaaagtaa 31188786  T
Q  464 cattttctacataaaacttataaattatttctatttttaaattcttaaccatt 516  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31188785 cattttctacataaaacttataaattatttttatttttaaattcttaaccatt 31188733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 361 - 539
Target Start/End: Original strand, 5000297 - 5000476
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    ||||||||||||||||| | |||  |  ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5000297 gggaaatgctaaccattcctctggagatactggttaagaagtctaaaatggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 5000396  T
Q  461 taaca-ttttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaa 539  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  5000397 taacatttttttacataaaacttataaattatttctatttttaaatccttaaacattgccctgagggcattggttagcaa 5000476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 361 - 545
Target Start/End: Original strand, 27088264 - 27088449
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    |||||||||||||||||   |||||  |||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  27088264 gggaaatgctaaccattgttctgagaacactagttaaaaattttaaaaaggaagttttgtcttggaaataatacattcaagacattgaaagtttaaaaag 27088363  T
Q  461 t-aacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    | || ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||| |||||||||||||    
T  27088364 taaatattttctacataaaacttataaaatatttctatttttaaattattaaccattgccatgaggacattgattagcaagaccct 27088449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 361 - 545
Target Start/End: Complemental strand, 27190037 - 27189852
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    |||||||||||||||||   |||||  |||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  27190037 gggaaatgctaaccattgttctgagaacactagttaaaaattttaaaaaggaagttttgtcttggaaataatacattcaagacattgaaagtttaaaaag 27189938  T
Q  461 t-aacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    | || ||||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||| ||||| |||||||||||||    
T  27189937 taaatattttctacataaaacttataaaatatttctatttttaaattattaaccattgccatgaggacattgattagcaagaccct 27189852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 384 - 524
Target Start/End: Original strand, 23797679 - 23797819
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaactta 483  Q
    |||||||| ||||||||||||||| || || |||| |||||| ||||||| |||||| ||||| ||| ||||||||||||  |||||||| ||||| |||    
T  23797679 agggcacttgttaagaagtttaaagagaaaattttatcttgggaatgatgtattcaatacattaaaaatttaaaaagtaattttttctacctaaaattta 23797778  T
Q  484 taaattatttctatttttaaattcttaaccattgccctgag 524  Q
    ||||||| |||||||||| |||  ||||| ||| |||||||    
T  23797779 taaattacttctatttttgaatctttaactattaccctgag 23797819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 385 - 503
Target Start/End: Original strand, 35720939 - 35721057
Alignment:
Q  385 gggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttat 484  Q
    ||||||| |||||||||||||||||| || |||| | |||| |||||||||||||| | ||||||||||||||||||||| || ||||||||||| || |    
T  35720939 gggcacttgttaagaagtttaaaaagaaaattttattttgggaatgatgcattcaacatattgaaagtttaaaaagtaactttatctacataaaatttgt 35721038  T
Q  485 aaattatttctatttttaa 503  Q
    ||| ||||| ||| |||||    
T  35721039 aaactatttttatatttaa 35721057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 393 - 541
Target Start/End: Original strand, 43189794 - 43189943
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaac-attttctacataaaacttataaattat 491  Q
    ||||||||||||| | ||||| |||| |||||  ||||||| | |||| ||||||||| |||||||||||||  |||| ||||||||| ||||||||||     
T  43189794 gttaagaagtttacataggaaattttatcttgagaatgatgtagtcaatacattgaaaatttaaaaagtaacttttttttacataaaatttataaattac 43189893  T
Q  492 ttctatttttaaattcttaaccattgccctgagggcattggttagcaaga 541  Q
    |||||||||| |||  ||||| | |||||| || |||||  |||||||||    
T  43189894 ttctatttttgaatcgttaactagtgccctaagagcattaattagcaaga 43189943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 422 - 535
Target Start/End: Original strand, 30824916 - 30825031
Alignment:
Q  422 ttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgcc-- 519  Q
    |||||||||||| |||||| ||||||||| ||||||||||||| || ||| |||||||||| |||||||||||||| ||| |||  ||||| | ||||      
T  30824916 ttggaaatgatgtattcaacacattgaaaatttaaaaagtaactttatctgcataaaacttgtaaattatttctatatttgaatctttaactagtgccct 30825015  T
Q  520 ctgagggcattggtta 535  Q
    || |||||||||||||    
T  30825016 ctaagggcattggtta 30825031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 388 - 493
Target Start/End: Original strand, 4232722 - 4232827
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| |||||||||||||||||  || |||| ||||   ||||||| |||||| ||||||||||||||||||||||  || |||| ||||||||| ||||    
T  4232722 cacttgttaagaagtttaaaaataaaattttatcttaagaatgatgtattcaacacattgaaagtttaaaaagtaattttatctatataaaacttgtaaa 4232821  T
Q  488 ttattt 493  Q
    ||||||    
T  4232822 ttattt 4232827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 393 - 545
Target Start/End: Complemental strand, 7728693 - 7728541
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    ||||||||| |||||||  || |||||||||||||||| |||||| ||  |||||||| ||||||| ||||| |||| ||  ||||| |||| |||||||    
T  7728693 gttaagaagattaaaaaataatttttgtcttggaaatggtgcatttaattcattgaaattttaaaatgtaactttttataattaaaatttatcaattatt 7728594  T
Q  493 tctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    | |||||||  || |||| | | |||||| |||| | | ||||||||||||||    
T  7728593 tttatttttgtatccttatcaaatgccctaagggtacttgttagcaagaccct 7728541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 379 - 501
Target Start/End: Complemental strand, 23829017 - 23828892
Alignment:
Q  379 ccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaa 478  Q
    |||| ||| ||||||||||||||  |||| | |||||||||||||  |||||||||||||||   ||||||| |||| ||||||||||||||||| |||     
T  23829017 ccctaaggacactagttaagaagactaaagaagaagttttgtcttaaaaatgatgcattcaatgtattgaaattttagaaagtaacattttctacttaac 23828918  T
Q  479 acttataa---attatttctattttt 501  Q
    | |||| |   |||||||||||||||    
T  23828917 atttatcaactattatttctattttt 23828892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 359 - 494
Target Start/End: Complemental strand, 28198163 - 28198028
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | | |||  |||||||| ||| ||||||  ||| | |||  ||| ||||||||||  || |||||||||||||||| || ||||    
T  28198163 aagggaaatgctaacaagtgccccaagggcacttgtttagaagtccaaagaagaaactttttcttggaaattgtgtattcaagacattgaaacttcaaaa 28198064  T
Q  459 agtaacattttctacataaaacttataaattatttc 494  Q
    || ||| |||||||||||||  ||||||||||||||    
T  28198063 agaaactttttctacataaattttataaattatttc 28198028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 456
Target Start/End: Original strand, 36595338 - 36595435
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaa 456  Q
    |||||||||||||||   |  ||| ||||||||  || |||||| |||| ||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  36595338 aagggaaatgctaacatgtggccttagggcacttctttagaagtctaaagaggaaattttgtcttggaaatgatgcattcaaaacattaaaagtttaa 36595435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 388 - 510
Target Start/End: Original strand, 5909068 - 5909190
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| |||||||||| |||| | |||  |||||||||||| ||||||||||||  | |||||| ||| |||| |||| ||||  |||||||| |||| ||    
T  5909068 cacttgttaagaagtctaaagaagaaactttgtcttggaagtgatgcattcaatgccttgaaactttgaaaaataacttttttaacataaaaattatcaa 5909167  T
Q  488 ttatttctatttttaaattctta 510  Q
    |||||| ||||||| ||| ||||    
T  5909168 ttatttttatttttgaatcctta 5909190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 420 - 501
Target Start/End: Original strand, 39118249 - 39118333
Alignment:
Q  420 tcttggaaatgatgcattcaagacattgaaagtttaaaaa---gtaacattttctacataaaacttataaattatttctattttt 501  Q
    |||||||||||||||||| ||  |||||||| ||||||||   ||||||||||  ||||| ||||||| ||||||||||||||||    
T  39118249 tcttggaaatgatgcatttaactcattgaaactttaaaaaatagtaacatttttcacatagaacttatcaattatttctattttt 39118333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 34963485 - 34963386
Alignment:
Q  394 ttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    ||||||||||||||||  || |||| ||||||||||| |||||||||  |||  ||| ||| |||||| || |||||||| ||||| |||| ||||||||    
T  34963485 ttaagaagtttaaaaaataaattttatcttggaaatggtgcattcaatgcatgaaaactttgaaaagtgactttttctacttaaaatttatcaattattt 34963386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 437 - 520
Target Start/End: Original strand, 43952468 - 43952551
Alignment:
Q  437 tcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccc 520  Q
    |||| ||||||||| || |||| ||||  ||||||||||||||||||  ||||| ||||||||| |||| |||||| |||||||    
T  43952468 tcaacacattgaaacttgaaaatgtaaatttttctacataaaacttaccaattacttctattttaaaatccttaacaattgccc 43952551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 444 - 511
Target Start/End: Original strand, 44107020 - 44107087
Alignment:
Q  444 attgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaa 511  Q
    ||||||| || |||||||||  ||||||||||||||||||| |||||||| ||||||  |||||||||    
T  44107020 attgaaacttgaaaaagtaattttttctacataaaacttatcaattatttatattttagaattcttaa 44107087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 503
Target Start/End: Complemental strand, 8055096 - 8055022
Alignment:
Q  430 gatgcattcaagacattgaaagtttaaaaagtaacattttctacat-aaaacttataaattatttctatttttaa 503  Q
    ||||||||||| | ||||||| ||||||||||||| |||  || || |||||||||||||||||| |||||||||    
T  8055096 gatgcattcaacatattgaaaatttaaaaagtaacttttattagattaaaacttataaattatttatatttttaa 8055022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 545
Target Start/End: Original strand, 19677103 - 19677141
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  19677103 cttaaccaatgccctgagggcattggttagcaagaccct 19677141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 499
Target Start/End: Complemental strand, 38912982 - 38912900
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattt 499  Q
    |||||||||||||| |||||||||  |||||||| |||||||   ||| |||||||  ||||| |||| ||||||||||||||    
T  38912982 ttgtcttggaaatggtgcattcaatgcattgaaactttaaaatacaactttttctatttaaaatttatcaattatttctattt 38912900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 24937939 - 24937976
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||||||||||||| |||||||||||||||    
T  24937939 cttaaccattgccctgagggcactggttagcaagaccc 24937976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 435 - 512
Target Start/End: Original strand, 35116895 - 35116972
Alignment:
Q  435 attcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||| ||||||||| || |||||| ||  |||||||||||||| ||||||||||||||  ||||| ||| ||||||    
T  35116895 attcaatacattgaaacttcaaaaaggaaatttttctacataaaatttataaattatttccttttttgaatccttaac 35116972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 47188475 - 47188532
Alignment:
Q  455 aaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||||||| |||||||||||||| |||| |||| ||||||||||| ||| ||||||    
T  47188475 aaaaagtaactttttctacataaaagttattaattgtttctatttttgaatccttaac 47188532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 501
Target Start/End: Original strand, 38663681 - 38663739
Alignment:
Q  443 cattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattttt 501  Q
    |||||||| ||||||||||||| |||| ||  ||||| |||| ||||||||||||||||    
T  38663681 cattgaaactttaaaaagtaactttttatatttaaaatttatcaattatttctattttt 38663739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 544
Target Start/End: Original strand, 46579010 - 46579112
Alignment:
Q  442 acattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaaga 541  Q
    ||||||||| || |||| | |||||||||| ||| ||| | ||||||||||||   |||||||| |||||||||| |||| ||| || ||||||  ||||    
T  46579010 acattgaaaattaaaaatgaaacattttctccatgaaattcataaattatttcctattttaaatccttaaccattacccttaggacaatggttaataaga 46579109  T
Q  542 ccc 544  Q
    |||    
T  46579110 ccc 46579112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 545
Target Start/End: Complemental strand, 1910228 - 1910191
Alignment:
Q  508 ttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  1910228 ttaaccattgccctgatggcaatggttagcaagaccct 1910191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 512
Target Start/End: Complemental strand, 12838025 - 12837900
Alignment:
Q  387 gcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataa 486  Q
    ||||| ||||||||| |||||| ||||  |||   || ||||| ||| | ||||||||||||||  |||||||| ||| |  ||||||||||| |||| |    
T  12838025 gcacttgttaagaagattaaaatggaaactttacattagaaattatgtaatcaagacattgaaacattaaaaagcaacttaatctacataaaatttatca 12837926  T
Q  487 attatttctatttttaaattcttaac 512  Q
    ||| |||||||| || ||| ||||||    
T  12837925 attgtttctattcttgaatccttaac 12837900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 508 - 544
Target Start/End: Complemental strand, 31860287 - 31860251
Alignment:
Q  508 ttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||||| |||||| |||||||||||||||    
T  31860287 ttaaccattgcccttagggcactggttagcaagaccc 31860251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 396 - 545
Target Start/End: Original strand, 3686792 - 3686941
Alignment:
Q  396 aagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttct 495  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||| ||||||||||||||||||||||||    
T  3686792 aagaagtttaaaaatgaagttttgtcttggaaatgatgcattcaagatattgaaagtttaaaaaatagcattttcgacataaaacttataaattatttct 3686891  T
Q  496 atttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  3686892 atttttaaattcttaaccattgccccgagggcattgcttagcaagaccct 3686941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 359 - 544
Target Start/End: Original strand, 10228273 - 10228457
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    |||||||||| ||| || | || |||| | ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||    
T  10228273 aagggaaatgttaatcagtgccatgagagtactggttaagaaatttaaaaaggaagttttttcttggaaatgatgcattcaagacattaaaagttt-aaa 10228371  T
Q  459 agtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||  ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||||   || |||||||||||||||    
T  10228372 agtaattttttctacaaaaaatttataaattattttcatttttaaattcttaaccattgccctgaaaacactggttagcaagaccc 10228457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 394 - 512
Target Start/End: Complemental strand, 8082572 - 8082455
Alignment:
Q  394 ttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    ||||||||| |||| | ||| |||||||||| ||||| |||||| ||  |||||||| ||||||||||||  |||||| ||||||| |||  ||||||||    
T  8082572 ttaagaagtctaaataagaaattttgtcttgaaaatggtgcattaaatgcattgaaactttaaaaagtaattttttct-cataaaatttactaattattt 8082474  T
Q  494 ctatttttaaattcttaac 512  Q
    |||||||||||| ||||||    
T  8082473 ctatttttaaatccttaac 8082455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 359 - 543
Target Start/End: Complemental strand, 21273818 - 21273633
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | | | |  |||| ||| ||||| ||||||||| ||  | |||| |||||| || |||| |||||| |||| ||||||||||||    
T  21273818 aagggaaatgctaacaagtgctccaagggtacttgttaaaaagtttaaagagataattttatcttgggaacgatgtattcaacacatggaaagtttaaaa 21273719  T
Q  459 agtaacattttctacataaaacttataaattatttctattt-ttaaattcttaaccattgccctgagggcattggttagcaagacc 543  Q
    |||||| || |||||| |||| || |||||||||||||||| || ||| |||||| | || ||| ||  || ||||||||||||||    
T  21273718 agtaactttatctacacaaaatttgtaaattatttctatttgttgaatccttaactaatgtcctaagaacactggttagcaagacc 21273633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 402 - 545
Target Start/End: Complemental strand, 31597630 - 31597486
Alignment:
Q  402 tttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttcta-tttt 500  Q
    ||||||| |||| |||||||||| || |  ||||||||| ||||| |||  |||||||||||| |||||||||||||| ||||||||| ||| || ||||    
T  31597630 tttaaaatggaaattttgtcttgaaatttgtgcattcaacacattaaaacattaaaaagtaactttttctacataaaagttataaattgtttttattttt 31597531  T
Q  501 taaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||| |||||| | ||  || || ||||| |||| |||||||||    
T  31597530 taaatccttaacaagtgttcttagagcatttgttaacaagaccct 31597486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 384 - 512
Target Start/End: Original strand, 24093779 - 24093906
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaactta 483  Q
    |||||||| ||||||||| ||||||  |||  ||| |||||| ||||||| |||||| || |||||| ||||||| | ||| |||||||||| ||| |||    
T  24093779 agggcacttgttaagaagcttaaaagagaaagtttatcttgggaatgatgtattcaacaccttgaaactttaaaatg-aactttttctacatcaaattta 24093877  T
Q  484 taaattatttctatttttaaattcttaac 512  Q
    ||| | |||||||||||| | ||||||||    
T  24093878 taattcatttctatttttgagttcttaac 24093906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Original strand, 32547697 - 32547776
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    ||||||||| ||||| ||||| || ||||||||||||||| ||| ||||| ||| ||||| |||||||||| ||||||||    
T  32547697 aaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttctaattttaaat 32547776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 31535682 - 31535772
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaa----cattttctacataaaacttataaattatttctattttt 501  Q
    |||| |||||||||||||||||| || ||||||||||||||||||||||      |||| ||||||||| |||||||| |||| |||||||    
T  31535682 ttttatcttggaaatgatgcatttaacacattgaaagtttaaaaagtaaatttttttttttacataaaatttataaatcatttttattttt 31535772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 399 - 501
Target Start/End: Original strand, 342948 - 343050
Alignment:
Q  399 aagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatt 498  Q
    |||||||||| | || |||||| |||||| | ||| |||||| |||||||||  ||||||| |||| |||| | ||||||| |||| |||| ||||||||    
T  342948 aagtttaaaatgaaaattttgttttggaatttatgtattcaacacattgaaacattaaaaaataactttttatgcataaaagttatcaattgtttctatt 343047  T
Q  499 ttt 501  Q
    |||    
T  343048 ttt 343050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 542
Target Start/End: Original strand, 23578756 - 23578910
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| ||||||||||||||| | ||| |||| | ||| ||||| ||   ||||  |||| ||| |||||| |||||| ||||  |||||||| |||| |     
T  23578756 cacttgttaagaagtttaaagaagaaattttattttgaaaatggtgttgtcaatgcattaaaattttaaatagtaactttttaaacataaaatttattat 23578855  T
Q  488 ttatttctatttttaaattcttaaccattgccctgagggcattggttagcaagac 542  Q
    ||||||||||||||||||  ||||| | |||||| || ||| | |||||||||||    
T  23578856 ttatttctatttttaaatctttaacaagtgccctaagtgcacttgttagcaagac 23578910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 360 - 401
Target Start/End: Original strand, 3686722 - 3686763
Alignment:
Q  360 agggaaatgctaaccattaccctgagggcactagttaagaag 401  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  3686722 agggaaatgataaccattgccctgagggcactagttaagaag 3686763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 501
Target Start/End: Original strand, 2801274 - 2801378
Alignment:
Q  398 gaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacatttt-ctacataaaacttataaattatttcta 496  Q
    ||||||||||| | ||  ||||||||| || | ||| |||||| ||||| |||  |||||||||||| |||| |||||||||| |||| |||| ||||||    
T  2801274 gaagtttaaaatgaaaactttgtcttgaaatttatgtattcaacacattaaaacattaaaaagtaacttttttctacataaaagttatcaattgtttcta 2801373  T
Q  497 ttttt 501  Q
    |||||    
T  2801374 ttttt 2801378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 542
Target Start/End: Original strand, 26572201 - 26572236
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagac 542  Q
    |||||||||||||||||||||| |||||||||||||    
T  26572201 cttaaccattgccctgagggcaatggttagcaagac 26572236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 494
Target Start/End: Complemental strand, 1302547 - 1302505
Alignment:
Q  452 tttaaaaagtaacattttctacataaaacttataaattatttc 494  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||    
T  1302547 tttaaaaagaaactttttctacataaaacttttaaattatttc 1302505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 505
Target Start/End: Original strand, 18742220 - 18742266
Alignment:
Q  459 agtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    |||||| |||||||| ||||| |||| ||||||||||||||||||||    
T  18742220 agtaactttttctacgtaaaatttatcaattatttctatttttaaat 18742266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 19645982 - 19645945
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||||||||||||| || |||||||||||||||    
T  19645982 cttaaccattgccctgaggacaatggttagcaagaccc 19645945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 501
Target Start/End: Complemental strand, 30456871 - 30456802
Alignment:
Q  432 tgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattttt 501  Q
    ||||||||| | ||||||| ||||||||||||| |||| |||  |||| |||| ||||||||| ||||||    
T  30456871 tgcattcaatatattgaaattttaaaaagtaactttttatactaaaaatttatcaattatttccattttt 30456802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 507 - 555
Target Start/End: Complemental strand, 28541941 - 28541894
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccctacaaacaatt 555  Q
    ||||||||||||| ||| |||||||||||||||||||| | ||||||||    
T  28541941 cttaaccattgcc-tgaaggcattggttagcaagacccaaaaaacaatt 28541894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 478
Target Start/End: Complemental strand, 29481949 - 29481897
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaa 478  Q
    |||||||||||||||   ||||||| |||||||||||||||| | ||||||||    
T  29481949 aaatgatgcattcaatgtattgaaactttaaaaagtaacattatttacataaa 29481897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 361 - 517
Target Start/End: Complemental strand, 41284744 - 41284588
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    |||||||| |||||||| |||||||||||   |||||||||| ||||||  |||||||||||| |||||||||||||||||||| |||||||||||||||    
T  41284744 gggaaatgttaaccattgccctgagggcatcggttaagaagtctaaaaaaaaagttttgtcttagaaatgatgcattcaagacactgaaagtttaaaaag 41284645  T
Q  461 taacattttctacataaaacttataaattatttctatttttaaattcttaaccattg 517  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  41284644 taacactttctacataaaatttataaattatttctatttttaaatccttaaccattg 41284588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 393 - 546
Target Start/End: Complemental strand, 752268 - 752115
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    |||||||||| |||| | ||| ||||||||||| | |||||||||||| ||||||||| || |||||||||  |||||||||||||||| |  |||||||    
T  752268 gttaagaagtctaaagaagaaattttgtcttgggattgatgcattcaacacattgaaacttgaaaaagtaattttttctacataaaactaaccaattatt 752169  T
Q  493 tctatttttaaattcttaaccattgccctgagggcattggttagcaagacccta 546  Q
    ||||||||  |||||||||| | |||||| |||| | | |||||||||||||||    
T  752168 tctattttagaattcttaacaagtgccctaagggtacttgttagcaagacccta 752115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 359 - 512
Target Start/End: Original strand, 12880045 - 12880198
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | |  ||| |||||||| ||| |||| | |||| |||||||||| ||||||||| | || |||||| ||||||||| |||||||    
T  12880045 aagggaaatgctaacaagtgacctaagggcacttgtttagaaatctaaagaggaagttttatcttggaaacggtgtattcaacacattgaaattttaaaa 12880144  T
Q  459 agtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||  ||||||||||||||||||| ||||||||| |||||| ||| ||||||    
T  12880145 agtaattttttctacataaaacttatcaattatttccatttttgaatccttaac 12880198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 394 - 505
Target Start/End: Original strand, 40867915 - 40868027
Alignment:
Q  394 ttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagt-aacattttctacataaaacttataaattatt 492  Q
    |||||||||||||||| |||||||||||||  |||||||| |||||| |||||||||||||||||| | ||  ||||||  ||||||||| |||||||||    
T  40867915 ttaagaagtttaaaaatgaagttttgtctttaaaatgatgtattcaacacattgaaagtttaaaaattaaattttttctttataaaacttgtaaattatt 40868014  T
Q  493 tctatttttaaat 505  Q
    | |||||||||||    
T  40868015 tttatttttaaat 40868027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 393 - 512
Target Start/End: Original strand, 41311691 - 41311810
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    ||||||||||||||| || || |||||| ||| |||| ||||||| || | ||||||||||||||||||||  |||||||||||||| |||||||| |||    
T  41311691 gttaagaagtttaaagagaaaattttgttttgaaaattatgcatttaacaaattgaaagtttaaaaagtaattttttctacataaaatttataaatcatt 41311790  T
Q  493 tctatttttaaattcttaac 512  Q
    |  |||||| ||| ||||||    
T  41311791 tacatttttgaatccttaac 41311810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 418 - 511
Target Start/End: Original strand, 4640205 - 4640298
Alignment:
Q  418 tgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaa 511  Q
    |||||||  |||||||||||||| || |||||| |||||||||| || |||||||| |||||||||||||||||||  |||||||||| |||||    
T  4640205 tgtcttgagaatgatgcattcaacacgttgaaaatttaaaaagttactttttctacgtaaaacttataaattattttcatttttaaatccttaa 4640298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 393 - 493
Target Start/End: Complemental strand, 32838748 - 32838648
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    ||||||||  ||||| | ||| ||||||||||||||||||||||||||  |||||||| ||||||| |||||||||||||  ||||| |||| |||||||    
T  32838748 gttaagaaaattaaagaagaaattttgtcttggaaatgatgcattcaatgcattgaaactttaaaatgtaacattttctatttaaaatttatcaattatt 32838649  T
Q  493 t 493  Q
    |    
T  32838648 t 32838648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 439 - 545
Target Start/End: Complemental strand, 9049018 - 9048914
Alignment:
Q  439 aagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagca 538  Q
    ||||||||||| |||||||||||||  |||||||||||||| |||| |||||||| |||||||||||  |||| ||||||  |||||||  |||||| ||    
T  9049018 aagacattgaaggtttaaaaagtaatcttttctacataaaatttattaattatttttatttttaaatctttaatcattgctatgagggc--tggttaaca 9048921  T
Q  539 agaccct 545  Q
    |||||||    
T  9048920 agaccct 9048914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 505
Target Start/End: Complemental strand, 40462193 - 40462087
Alignment:
Q  399 aagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatt 498  Q
    ||||||||| || || ||||||||||  ||||||  |||||||| |||  || ||||||||||||  ||||||||||||||||||||||||  |||||||    
T  40462193 aagtttaaagagaaaattttgtcttgagaatgatatattcaagatattagaaatttaaaaagtaattttttctacataaaacttataaattgcttctatt 40462094  T
Q  499 tttaaat 505  Q
    |||||||    
T  40462093 tttaaat 40462087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 446 - 544
Target Start/End: Original strand, 40619897 - 40619994
Alignment:
Q  446 tgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||||||||||| | |||| |||||||||||||||  ||||| | |||||||||| ||||||||||||||| ||| || |||||| ||||||||    
T  40619897 tgaaagtttaaaaagtagctttttgtacataaaacttatat-ttattaccatttttaaatccttaaccattgccctaaggacaatggttaacaagaccc 40619994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 493
Target Start/End: Complemental strand, 19002842 - 19002765
Alignment:
Q  416 tttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    ||||||||||||||| |||||||||  |||||||| ||||||||||||  |||||||| ||||| |||| ||||||||    
T  19002842 tttgtcttggaaatggtgcattcaatgcattgaaattttaaaaagtaaatttttctacttaaaatttatcaattattt 19002765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 1870499 - 1870462
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||||||||||||| |||||||||||||||    
T  1870499 cttaaccattgccctgagggcactggttagcaagaccc 1870462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 544
Target Start/End: Original strand, 36087433 - 36087488
Alignment:
Q  490 atttctatttttaaattc-ttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||| || |||| ||||||||||||||||||||| | |||||||||||||    
T  36087433 atttctatttgtagattccttaaccattgccctgagggcactagttagcaagaccc 36087488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 499
Target Start/End: Complemental strand, 41252840 - 41252757
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaa-cattttctacataaaacttataaattatttctattt 499  Q
    ||||||||||||||||||||||||  |||||||| ||||||| ||||   |||||||| ||||| | || |||||||| |||||    
T  41252840 ttgtcttggaaatgatgcattcaatgcattgaaactttaaaatgtaatttttttctacttaaaattcatcaattatttgtattt 41252757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 499
Target Start/End: Complemental strand, 38042540 - 38042447
Alignment:
Q  405 aaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattt 499  Q
    ||||||||| |||||| || |||||  ||||||||   |||||||| || |||||||||| |||| ||| ||||| |||| ||||||||||||||    
T  38042540 aaaaaggaa-ttttgtattagaaattgtgcattcattgcattgaaacttaaaaaagtaaccttttgtacttaaaatttatcaattatttctattt 38042447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 39575564 - 39575490
Alignment:
Q  420 tcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttc 494  Q
    ||||||||||  || ||| || ||||||||| || |||||| ||| |||| ||||||||| ||||||||||||||    
T  39575564 tcttggaaattgtgtatttaacacattgaaacttcaaaaagaaactttttatacataaaatttataaattatttc 39575490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 442 - 512
Target Start/End: Complemental strand, 45085748 - 45085678
Alignment:
Q  442 acattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||||||| ||||||| ||||  || | ||||||||| | ||||||||||| |||||||||||| |||||    
T  45085748 acattgaaattttaaaatgtaaatttctttacataaaattcataaattatttttatttttaaatttttaac 45085678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 499
Target Start/End: Complemental strand, 43888981 - 43888840
Alignment:
Q  358 caagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaa 457  Q
    |||||||||||||||| |||| |   || ||||| ||||||| ||  ||| || ||||||||| |||  |||||  ||||||| | | | ||||||||||    
T  43888981 caagggaaatgctaacaattatc---agagcacttgttaagatgtgcaaagagtaagttttgttttgagaatgacacattcaatataataaaagtttaaa 43888885  T
Q  458 aagtaacattttct---acataaaacttataaattatttctattt 499  Q
    ||||||| |||| |   | |||||||||||||||||||| |||||    
T  43888884 aagtaaccttttttttaatataaaacttataaattatttttattt 43888840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 44949266 - 44949334
Alignment:
Q  444 attgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    |||||||| |||||||  |||||||||||| ||||| |||  |||| |||  |||||||||||||||||    
T  44949266 attgaaagattaaaaaacaacattttctacgtaaaatttaacaattgttttcatttttaaattcttaac 44949334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 362 - 503
Target Start/End: Complemental strand, 15280621 - 15280480
Alignment:
Q  362 ggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagt 461  Q
    |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||| |||||||||||||||| |    
T  15280621 ggaaatgctaactattatcctgatggcactagttaagaagtttaaaaaggaagttttatcttagaaatgatgcactcaagatattgaaagtttaaaaaat 15280522  T
Q  462 aacattttctacataaaacttataaattatttctatttttaa 503  Q
    |||||||| ||||||||| |||||||||||||||||||||||    
T  15280521 aacattttttacataaaatttataaattatttctatttttaa 15280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 393 - 545
Target Start/End: Complemental strand, 42826692 - 42826538
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaatt-at 491  Q
    |||||||||| ||||| | ||||||||||||| |||| |||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| ||    
T  42826692 gttaagaagtctaaaaggaaagttttgtcttgaaaattatgcattcaagacattgaagatttaaaaagtaacattttctacataaaatttataaattaat 42826593  T
Q  492 ttcta-tttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||| | |||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  42826592 ttccagttttaaaattcttaaccattgccccgagggcattggttagcaagaccct 42826538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 388 - 542
Target Start/End: Complemental strand, 2571111 - 2570958
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| ||||||||||||||||||||| |||| |||||| ||||||| |||||| ||||||||| |||||||| ||||  | |||||||||||||| ||||    
T  2571111 cacttgttaagaagtttaaaaaggaaattttatcttgggaatgatgtattcaacacattgaaactttaaaaa-taactatatctacataaaacttgtaaa 2571013  T
Q  488 ttatttctatttttaaattcttaaccattgccctgagggcattggttagcaagac 542  Q
    |||||||||| ||| ||| |||||| | |||||| ||||||||||||| ||||||    
T  2571012 ttatttctatatttgaatccttaactagtgccctaagggcattggttaacaagac 2570958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 15329120 - 15329187
Alignment:
Q  548 aaacaattatcagtaaggagagaaagttcaccaaagtttggaggagctagaataaaaatatatattag 615  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15329120 aaacaattatcagtaaggagaaaaagttcaccaaagtttggaggagctagaataaaaatatatattag 15329187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 388 - 545
Target Start/End: Original strand, 29356890 - 29357046
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| |||||||||| ||||||| |||||  ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || | | |||| ||    
T  29356890 cacttgttaagaagtctaaaaagaaagttcagtcttggaaataatgcattcaagatattgaaagtttaaaaagtaacattttctaaat-atatttatgaa 29356988  T
Q  488 ttatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||  ||||||||||  |||| ||||||  |||||||  || ||||||| |||||    
T  29356989 ttattttcatttttaaatcattaatcattgctttgagggcgctgattagcaaaaccct 29357046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 393 - 535
Target Start/End: Original strand, 1411675 - 1411816
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    ||||||||||||||||||||| |||| |||| | ||||||| |||||| ||||||||||||||||||||||  || |||||||||||||| ||||||| |    
T  1411675 gttaagaagtttaaaaaggaaattttatcttaggaatgatgtattcaacacattgaaagtttaaaaagtaa-tttatctacataaaacttgtaaattact 1411773  T
Q  493 tctatttttaaattcttaaccattgccctgagggcattggtta 535  Q
    ||||| ||| |||  ||||| | |||| | ||| |||||||||    
T  1411774 tctatatttgaatctttaactagtgccttaaggacattggtta 1411816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 384 - 545
Target Start/End: Complemental strand, 36995359 - 36995197
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaactt- 482  Q
    |||||||| ||||||||||  ||| | ||| |||||| ||||||||| |||||||||  |||||||| |||| |||||||| |||||||| ||||| ||     
T  36995359 agggcacttgttaagaagtccaaagaagaaattttgttttggaaatggtgcattcaatgcattgaaattttataaagtaactttttctacttaaaaattt 36995260  T
Q  483 ataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |  ||||||||| ||||||  || |||||| | |||||| |||||| | ||||||||||||||    
T  36995259 accaattatttccatttttgtatccttaacaagtgccctaagggcacttgttagcaagaccct 36995197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 387 - 512
Target Start/End: Complemental strand, 28765646 - 28765521
Alignment:
Q  387 gcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataa 486  Q
    ||||| ||||| ||||||||| || || ||||| ||| ||||||||| |||||| ||||||||||||||||||||||  | |||| | ||||| || |||    
T  28765646 gcacttgttaaaaagtttaaagagaaaattttgccttagaaatgatgtattcaacacattgaaagtttaaaaagtaatttattctgcgtaaaatttgtaa 28765547  T
Q  487 attatttctatttttaaattcttaac 512  Q
    |||| |||||||||| ||| ||||||    
T  28765546 attacttctattttttaatccttaac 28765521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 419 - 521
Target Start/End: Complemental strand, 34620710 - 34620608
Alignment:
Q  419 gtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgc 518  Q
    ||||||| | |||||||||||| ||||||||| || |||||||||  ||||||||||||||||||  |||||||||||||||  ||| |||||| | |||    
T  34620710 gtcttgggattgatgcattcaacacattgaaacttgaaaaagtaattttttctacataaaacttaccaattatttctattttagaatccttaacaagtgc 34620611  T
Q  519 cct 521  Q
    |||    
T  34620610 cct 34620608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 420 - 528
Target Start/End: Complemental strand, 25129937 - 25129829
Alignment:
Q  420 tcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgcc 519  Q
    ||||||||||| |||||||||  |||||||| ||||||| ||||| |||||||| ||||| | || |||||||||||||| || ||| ||||| | ||||    
T  25129937 tcttggaaatggtgcattcaatgcattgaaactttaaaatgtaactttttctacttaaaattcatcaattatttctatttatatatttttaacaagtgcc 25129838  T
Q  520 ctgagggca 528  Q
    |||| ||||    
T  25129837 ctgaaggca 25129829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 501
Target Start/End: Complemental strand, 27262858 - 27262752
Alignment:
Q  395 taagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttc 494  Q
    |||||||||||||| |||| ||||||||| ||| |  || |||||| ||||| |||  |||||||||||  |||||||||||||| |||| |||| ||||    
T  27262858 taagaagtttaaaatggaaattttgtcttagaatttgtgtattcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtttc 27262759  T
Q  495 tattttt 501  Q
    |||||||    
T  27262758 tattttt 27262752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 416 - 501
Target Start/End: Complemental strand, 49899126 - 49899041
Alignment:
Q  416 tttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattttt 501  Q
    ||||| ||||||||||||||||||| ||||||||| ||| ||||||||  | || |||||||||||||  ||||||||||| ||||    
T  49899126 tttgttttggaaatgatgcattcaacacattgaaattttgaaaagtaatttattttacataaaacttaccaattatttctactttt 49899041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 462 - 544
Target Start/End: Complemental strand, 1905788 - 1905706
Alignment:
Q  462 aacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||| ||||||||| ||| | ||||||||||||   |||| ||| ||||||||||||||| |||||| |||||||||||||||    
T  1905788 aacactttctacatgaaattcataaattatttcctcttttgaatccttaaccattgcccttagggcactggttagcaagaccc 1905706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 2507007 - 2507093
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattttt 501  Q
    ||||||||||  ||||||||||| || || |||||| ||||||||||||  |||| || |||||| |||| ||||||||||||||||    
T  2507007 ttttgtcttgagaatgatgcatttaatacgttgaaattttaaaaagtaattttttatatataaaatttatcaattatttctattttt 2507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 402 - 472
Target Start/End: Original strand, 10483271 - 10483341
Alignment:
Q  402 tttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttcta 472  Q
    |||||| |||||||||||| || ||||||||||||| || ||||||||||||| ||||||||  |||||||    
T  10483271 tttaaagaggaagttttgttttagaaatgatgcatttaatacattgaaagttttaaaagtaattttttcta 10483341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 395 - 505
Target Start/End: Complemental strand, 42592797 - 42592687
Alignment:
Q  395 taagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttc 494  Q
    |||||||||||||  ||||| ||| |||||||| |  || ||||||  ||||||||  |||||||||||  ||||| |||||||| |||| |||||||||    
T  42592797 taagaagtttaaagtggaaggtttatcttggaagttgtgtattcaacccattgaaacgttaaaaagtaattttttcaacataaaatttatcaattatttc 42592698  T
Q  495 tatttttaaat 505  Q
    | |||||||||    
T  42592697 tttttttaaat 42592687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 44697991 - 44698121
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||| ||||| | | |||| |||||||| | ||| |||||||||  ||||||||| |||||||| |  || |||||| | |||||||  ||||||    
T  44697991 aagggaaatactaacaagtgcccttagggcacttgataataagtttaaagtggaagttttatcttggaagttgtgtattcaacatattgaaacattaaaa 44698090  T
Q  459 agtaacattttctacataaaacttataaatt 489  Q
    |||||| ||||| |||||||| |||| ||||    
T  44698091 agtaactttttcaacataaaatttatcaatt 44698121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 501
Target Start/End: Complemental strand, 49806063 - 49805977
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattttt 501  Q
    |||||||||| || |  ||||||||| ||||| |||  | |||||||||| |||||||||||||| ||||||||| |||||||||||    
T  49806063 ttttgtcttgaaatttgtgcattcaacacattaaaatataaaaaagtaactttttctacataaaagttataaattgtttctattttt 49805977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 512
Target Start/End: Complemental strand, 35838674 - 35838552
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaa 487  Q
    |||| ||||| ||| ||||||| ||| |||||| || ||| ||| || ||||| ||||||||| || || ||||||| |||| |||||||||||||| ||    
T  35838674 cacttgttaaaaagcttaaaaatgaa-ttttgtattagaattgaggccttcaacacattgaaacttgaagaagtaacctttt-tacataaaacttatcaa 35838577  T
Q  488 ttatttctatttttaaattcttaac 512  Q
    |||||| || ||| |||||||||||    
T  35838576 ttatttttaatttaaaattcttaac 35838552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 494
Target Start/End: Complemental strand, 48902999 - 48902865
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    |||||||||||||||   | |||| |||||||| | ||||||||  ||| | ||| |||| |||| | |||| || |||||| |||||| || |||||||    
T  48902999 aagggaaatgctaacaggtgccctaagggcacttgctaagaagtcaaaagaagaaattttatcttaggaatggtgtattcaaaacattggaactttaaaa 48902900  T
Q  459 agtaacattttctacataaaacttataaattatttc 494  Q
    | |||| ||| ||||||||||||| |||||||||||    
T  48902899 aataacttttgctacataaaactt-taaattatttc 48902865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 528
Target Start/End: Original strand, 17630294 - 17630388
Alignment:
Q  435 attcaagacattgaaagtttaaaaagtaa-cattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggca 528  Q
    |||||||||||||||| || |||||  || | |||||||||||||| ||||||||||||||   |||||||| |||||| | |||||| ||||||    
T  17630294 attcaagacattgaaacttaaaaaaaaaaactttttctacataaaatttataaattatttcctcttttaaatccttaacaagtgcccttagggca 17630388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 545
Target Start/End: Complemental strand, 51972198 - 51972040
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcatt-caagacattgaaagtttaaaaagtaacattttctacataaaacttataa 486  Q
    |||| |||||||| |||||||| ||| |||||  |||  | ||||||||| ||| ||||||||| || ||||| |||| ||||| |||||||| |||  |    
T  51972198 cacttgttaagaattttaaaaaagaaattttgcattgagattgatgcattgcaacacattgaaacttgaaaaattaactttttcaacataaaatttacca 51972099  T
Q  487 attatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||| || |||  ||| |||||| | ||||||||||| | | ||||| ||||||||    
T  51972098 attatttttaatttagaatccttaactagtgccctgagggtacttgttagtaagaccct 51972040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 2351344 - 2351381
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2351344 cttaaccatagccctgagggcattggttagcaagaccc 2351381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 442 - 511
Target Start/End: Original strand, 48182112 - 48182180
Alignment:
Q  442 acattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaa 511  Q
    ||||||||| ||||||||||||| ||||| ||||| ||||||  ||||||||| |||||||||| |||||    
T  48182112 acattgaaactttaaaaagtaactttttc-acatagaacttaccaattatttccatttttaaatccttaa 48182180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 417 - 499
Target Start/End: Complemental strand, 8472437 - 8472358
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattt 499  Q
    |||||||||||||| |||||||||  |||||||| ||||    ||||| |||||||| ||||| |||| ||||||||||||||    
T  8472437 ttgtcttggaaatggtgcattcaaagcattgaaactttat---gtaactttttctacttaaaatttatcaattatttctattt 8472358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 493
Target Start/End: Original strand, 1609706 - 1609812
Alignment:
Q  386 ggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttata 485  Q
    |||||| ||||||||| ||||| |  || |||||||||| |||||||||||||||   |||||||  |||||| ||||  |||||||| ||||| ||||     
T  1609706 ggcacttgttaagaagattaaagaacaacttttgtcttgaaaatgatgcattcaatgtattgaaa-cttaaaatgtaattttttctacttaaaatttatc 1609804  T
Q  486 aattattt 493  Q
    ||||||||    
T  1609805 aattattt 1609812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 544
Target Start/End: Complemental strand, 8001770 - 8001715
Alignment:
Q  490 atttctatttttaaattc-ttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||| || |||| ||||||||||||||||||||| |||||||||| ||||    
T  8001770 atttctatttctagattccttaaccattgccctgagggcactggttagcaaaaccc 8001715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 546
Target Start/End: Original strand, 27209842 - 27209881
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagacccta 546  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  27209842 cttaaccattgccctcagggcaatggttagcaagacccta 27209881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 31366773 - 31366844
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaa 459  Q
    |||| |||||||||| |||  ||| |||||||| ||| ||||||||||||||| ||||||||| ||| ||||    
T  31366773 cacttgttaagaagtctaatgagggagttttgttttgaaaatgatgcattcaacacattgaaaattttaaaa 31366844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 507 - 546
Target Start/End: Original strand, 44603737 - 44603776
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagacccta 546  Q
    ||||||||||||||| |||||| |||||||||||||||||    
T  44603737 cttaaccattgcccttagggcactggttagcaagacccta 44603776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 488
Target Start/End: Complemental strand, 49381107 - 49381064
Alignment:
Q  446 tgaaagttt-aaaaagtaacattttctacataaaacttataaat 488  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||    
T  49381107 tgaaagtttgaaaaagtaacattttttacataaaacttataaat 49381064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 415 - 501
Target Start/End: Original strand, 2748574 - 2748660
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattttt 501  Q
    |||||||||  ||||| || ||||||  |||||||| ||| ||||||||  |||| ||| ||||| |||| ||||||||||||||||    
T  2748574 ttttgtcttaaaaatggtgaattcaatgcattgaaactttgaaaagtaattttttttacttaaaatttatcaattatttctattttt 2748660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 545
Target Start/End: Complemental strand, 4449014 - 4448976
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||||||||||| ||| |||||||||||||||||||    
T  4449014 cttaaccattgcccttaggacattggttagcaagaccct 4448976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 458
Target Start/End: Original strand, 15646908 - 15646982
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    |||||||| ||||| ||| ||||| | ||| |||||||||||||||| |||||| ||  |||||||| |||||||    
T  15646908 agggcacttgttaaaaagattaaagaagaaattttgtcttggaaatggtgcattgaatgcattgaaactttaaaa 15646982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 429 - 499
Target Start/End: Original strand, 39276713 - 39276783
Alignment:
Q  429 tgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctattt 499  Q
    |||||||||| | ||||| ||| || |||||||||  | ||||| ||||||||||| ||||||||||||||    
T  39276713 tgatgcattccacacattaaaatttgaaaaagtaatttattctatataaaacttatcaattatttctattt 39276783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 14331822 - 14331785
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  14331822 cttaaccattgccctgagggcaccggttagcaagaccc 14331785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 512
Target Start/End: Original strand, 26478091 - 26478148
Alignment:
Q  455 aaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||| |||| |||||||||||||| |||| |||| || |||||||| ||||||||||    
T  26478091 aaaaaataactttttctacataaaaattatcaattgttcctattttttaattcttaac 26478148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 548
Target Start/End: Complemental strand, 32267994 - 32267953
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccctaca 548  Q
    ||||||||||  |||||||||| |||||||||||||||||||    
T  32267994 cttaaccattatcctgagggcactggttagcaagaccctaca 32267953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 43168126 - 43168089
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  43168126 cttaaccatttccctgagggcactggttagcaagaccc 43168089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Original strand, 44359793 - 44359830
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||||||||||||| | |||||||||||||    
T  44359793 cttaaccattgccctgagggcactagttagcaagaccc 44359830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 429 - 505
Target Start/End: Original strand, 5173068 - 5173144
Alignment:
Q  429 tgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    |||||||||||| | ||| ||| || |||||||||| ||||||| ||||||||||  |||| |||||| ||| ||||    
T  5173068 tgatgcattcaacatattaaaacttgaaaaagtaactttttctatataaaacttaccaattctttctaatttaaaat 5173144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 502 - 546
Target Start/End: Complemental strand, 8772397 - 8772353
Alignment:
Q  502 aaattcttaaccattgccctgagggcattggttagcaagacccta 546  Q
    |||| ||||||||||||||| |||||| |||||||| ||||||||    
T  8772397 aaatccttaaccattgcccttagggcactggttagcgagacccta 8772353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 392 - 440
Target Start/End: Original strand, 12234949 - 12234997
Alignment:
Q  392 agttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaa 440  Q
    |||||||||||| ||||||||| |||||||| ||||||| |||| ||||    
T  12234949 agttaagaagttcaaaaaggaaattttgtctcggaaatggtgcactcaa 12234997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 512
Target Start/End: Original strand, 18407419 - 18407567
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    ||||||||||| | | |||||| |  ||||| ||| |||||||||||||| || ||| || |||  |||||| |||||||   ||||||| |||||||||    
T  18407419 gggaaatgctagcaagtaccctcaaagcacttgtttagaagtttaaaaagaaacttt-gttttgagaatgatacattcaatgtattgaaactttaaaaag 18407517  T
Q  461 taacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||   |||||||||||||  |||| ||||||||  |||||| ||| ||||||    
T  18407518 tatttttttctacataaa--ttatcaattatttagatttttgaatccttaac 18407567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 501
Target Start/End: Original strand, 32161582 - 32161622
Alignment:
Q  461 taacattttctacataaaacttataaattatttctattttt 501  Q
    |||| |||||||||||||| |||| ||||||||||||||||    
T  32161582 taactttttctacataaaatttatcaattatttctattttt 32161622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 47019091 - 47019027
Alignment:
Q  386 ggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaa 450  Q
    |||||| | |||||||||||||  ||||||||| |||||||| |  ||||||||| |||||||||    
T  47019091 ggcacttgataagaagtttaaagtggaagttttttcttggaatttttgcattcaatacattgaaa 47019027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 365 - 539
Target Start/End: Original strand, 42350352 - 42350526
Alignment:
Q  365 aatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaac 464  Q
    |||||||| ||||  ||| | ||||||  ||||||||||||||    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||     
T  42350352 aatgctaatcattgtcctcatggcactgattaagaagtttaaatgaaaagttttgtcttgaaaatgatgcattcaagacattgaaaatttaaaaagtaaa 42350451  T
Q  465 attttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaa 539  Q
     |||||||||||||| |||||||||||||| |||||||||| ||||||||||||  ||| | |||||||||||||    
T  42350452 tttttctacataaaatttataaattatttccatttttaaatccttaaccattgctatgaagccattggttagcaa 42350526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 393 - 544
Target Start/End: Complemental strand, 472117 - 471967
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    |||||||| |||||||| ||| |||| | |||||||||||| |||||| ||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  472117 gttaagaaatttaaaaaagaaattttat-ttggaaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattatt 472019  T
Q  493 tctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||| |||||||||||||| | ||| || || |||||||||| ||||||||    
T  472018 tctatatttaaattcttaactagtgctctaagagcattggttaacaagaccc 471967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 386 - 521
Target Start/End: Complemental strand, 14955344 - 14955209
Alignment:
Q  386 ggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttata 485  Q
    |||||| |||||||| |||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||| ||    
T  14955344 ggcacttgttaagaattttaaagaggaagttttatcttggaaatgatgcattcaacacattgaaagtttaaaaagtaactttttctttataaaacttcta 14955245  T
Q  486 aattatttctatttttaaattcttaaccattgccct 521  Q
    | |||||||||||||| ||| |||||| | ||||||    
T  14955244 agttatttctatttttgaatccttaacaagtgccct 14955209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 394 - 546
Target Start/End: Original strand, 44063070 - 44063222
Alignment:
Q  394 ttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    |||||| || |||||  |||||||||| ||| ||| ||||||||||||| ||||||| |||||||| |||||||||| | |||||| |||||||||||||    
T  44063070 ttaagatgtctaaaagagaagttttgttttgaaaacgatgcattcaagatattgaaaatttaaaaaataacattttcaatataaaatttataaattattt 44063169  T
Q  494 ctatttttaaattcttaaccattgccctgagggcattggttagcaagacccta 546  Q
      ||||||||||  |||||||||||||| |   ||||||||||||||||||||    
T  44063170 taatttttaaatctttaaccattgccctaaaaacattggttagcaagacccta 44063222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 393 - 540
Target Start/End: Original strand, 17106162 - 17106307
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    ||||||||||||||||||||| |||| ||||||   ||| | |||||| |||||||||||||||||||| || || |||||||||||||| ||||||| |    
T  17106162 gttaagaagtttaaaaaggaaattttatcttggg--tgaagtattcaacacattgaaagtttaaaaagttactttatctacataaaacttgtaaattact 17106259  T
Q  493 tctatttttaaattcttaaccattgccctgagggcattggttagcaag 540  Q
    ||||| ||| ||| |||||| | ||||| ||| |||||||||| ||||    
T  17106260 tctatatttgaatccttaactagtgccccgagagcattggttaacaag 17106307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 385 - 505
Target Start/End: Complemental strand, 44711589 - 44711469
Alignment:
Q  385 gggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttat 484  Q
    ||||||| |||||||||||||||||| || |||| | |||| ||||||  |||||| ||||| ||||||||||||||||  || |||||||||||||| |    
T  44711589 gggcacttgttaagaagtttaaaaagaaaattttattttgggaatgatatattcaacacattaaaagtttaaaaagtaattttatctacataaaacttgt 44711490  T
Q  485 aaattatttctatttttaaat 505  Q
    ||| ||||||||| |||||||    
T  44711489 aaagtatttctatatttaaat 44711469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 394 - 544
Target Start/End: Complemental strand, 29602169 - 29602023
Alignment:
Q  394 ttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    |||||||||||||||||||| |||| |||    ||| ||| |||  | | ||||||||||||||||||||  || | |||||||||||||||||||||||    
T  29602169 ttaagaagtttaaaaaggaaattttatct----aataatgtatttgacatattgaaagtttaaaaagtaaatttatttacataaaacttataaattattt 29602074  T
Q  494 ctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||| ||| ||| |||||| | | |||| ||| ||||||||| ||||||||    
T  29602073 ctatatttgaatccttaactagtaccctaaggacattggttaacaagaccc 29602023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 479
Target Start/End: Original strand, 20305671 - 20305791
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | | || | | |||||| | |||||||||||||||||||||||| |||||| || | || | |||  |||||||||||||||||    
T  20305671 aagggaaatgctaacaagtgccttaacggcacttgataagaagtttaaaaaggaagttttatcttgggaagggtgtactcataacattgaaagtttaaaa 20305770  T
Q  459 agtaacattttctacataaaa 479  Q
    |||||  ||||||||| ||||    
T  20305771 agtaagtttttctacaaaaaa 20305791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 359 - 479
Target Start/End: Original strand, 21092304 - 21092424
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    ||||||||||||||| | | || | | |||||| | |||||||||||||||||||||||| |||||| || | || | |||  |||||||||||||||||    
T  21092304 aagggaaatgctaacaagtgccttaacggcacttgataagaagtttaaaaaggaagttttatcttgggaagggtgtactcataacattgaaagtttaaaa 21092403  T
Q  459 agtaacattttctacataaaa 479  Q
    |||||  ||||||||| ||||    
T  21092404 agtaagtttttctacaaaaaa 21092424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 384 - 512
Target Start/End: Complemental strand, 34497009 - 34496881
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaactta 483  Q
    |||||| | ||||||||||||||| | ||| |||||||||| |||| ||| ||||||  |||||||| |||| ||||||| ||||| ||| ||||| |||    
T  34497009 agggcaattgttaagaagtttaaagaagaaattttgtcttgtaaattatgtattcaatgcattgaaactttataaagtaatattttatacttaaaattta 34496910  T
Q  484 taaattatttctatttttaaattcttaac 512  Q
      ||||||||| ||||||  |||||||||    
T  34496909 ccaattatttccatttttgtattcttaac 34496881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 360 - 501
Target Start/End: Original strand, 42964747 - 42964887
Alignment:
Q  360 agggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaa 459  Q
    |||||||||||||| | | |||  |||||||| | |||||||||||||  |||| |||| |||||| | || || |||||| |||||||||  | |||||    
T  42964747 agggaaatgctaacaagttcccctagggcacttgataagaagtttaaagtggaaattttatcttgggattg-tgtattcaacacattgaaacatcaaaaa 42964845  T
Q  460 gtaacattttctacataaaacttataaattatttctattttt 501  Q
     |||| |||||||||| ||| |||| ||||||||| ||||||    
T  42964846 ataactttttctacatgaaagttatcaattatttccattttt 42964887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 393 - 501
Target Start/End: Original strand, 44814056 - 44814162
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatt 492  Q
    |||||||||  |||| | ||| |||||||||| ||||| |||||||||  |||||||| ||||||| | |||  ||||||| ||||| |||| |||||||    
T  44814056 gttaagaagactaaagaagaaattttgtcttgaaaatggtgcattcaa--cattgaaactttaaaatgcaaccctttctacttaaaatttatcaattatt 44814153  T
Q  493 tctattttt 501  Q
    |||||||||    
T  44814154 tctattttt 44814162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 505 - 545
Target Start/End: Original strand, 3137506 - 3137546
Alignment:
Q  505 ttcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  3137506 ttcttaaccattgccctgagggcactggttagcaagaccct 3137546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 512
Target Start/End: Original strand, 38048853 - 38048912
Alignment:
Q  452 tttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||||||||||  |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  38048853 tttaaaaagtaattttttctacataaat-ttataaattatttctatttttgaattcttaac 38048912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 453 - 544
Target Start/End: Complemental strand, 36470747 - 36470656
Alignment:
Q  453 ttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||||||||| || |||||||||||||| ||||||| |||||| ||| ||| |||||| | || ||| ||| ||||| ||| ||||||||    
T  36470747 ttaaaaagtaactttatctacataaaacttgtaaattacttctatatttgaatccttaactagtgtcctaaggacattgcttaacaagaccc 36470656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 501
Target Start/End: Complemental strand, 38869199 - 38869085
Alignment:
Q  388 cactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacat-aaaacttataa 486  Q
    |||| |||| ||||| |||| ||||| |||| |||| ||||| ||||||| ||  |||| ||||||||||||||||  |||| ||||| |||||||| ||    
T  38869199 cacttgttaggaagtctaaagaggaatttttatcttagaaataatgcatttaattcattaaaagtttaaaaagtaattttttttacataaaaacttacaa 38869100  T
Q  487 attatttctattttt 501  Q
    || ||||| ||||||    
T  38869099 atcatttccattttt 38869085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 386 - 479
Target Start/End: Original strand, 42631679 - 42631772
Alignment:
Q  386 ggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaa 479  Q
    ||||||||||||||||| |||| |  || |||||||||| ||||| |||||||||  |||| ||| ||||||| ||||  |||||||| |||||    
T  42631679 ggcactagttaagaagtctaaagaataaattttgtcttgaaaatggtgcattcaatgcattaaaactttaaaaggtaattttttctacttaaaa 42631772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 486 - 546
Target Start/End: Original strand, 45121049 - 45121110
Alignment:
Q  486 aattatttctatttttaa-attcttaaccattgccctgagggcattggttagcaagacccta 546  Q
    |||| ||| ||||||||| || ||||||||||||||| ||||||||||||||||| ||||||    
T  45121049 aattttttttatttttaacatccttaaccattgcccttagggcattggttagcaaaacccta 45121110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 505 - 545
Target Start/End: Original strand, 18131297 - 18131337
Alignment:
Q  505 ttcttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||| |||||||||||||||||| ||||||||||||||    
T  18131297 ttcttaatcattgccctgagggcattagttagcaagaccct 18131337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 426 - 512
Target Start/End: Complemental strand, 37953334 - 37953248
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaac 512  Q
    ||||||||||||||| |||| ||||  |||||||||||   ||| |  |||||| |||| |||||||||||||||| ||| ||||||    
T  37953334 aaatgatgcattcaacacatcgaaatgttaaaaagtaattatttttttataaaatttatcaattatttctatttttgaatccttaac 37953248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 4989921 - 4989884
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccc 544  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  4989921 cttaaccattgccatgagggcaatggttagcaagaccc 4989884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 539
Target Start/End: Original strand, 40607389 - 40607438
Alignment:
Q  491 tttctatttttaaatt-cttaaccattgccctgagggcattggttagcaa 539  Q
    ||||||||| |||||| |||||||||||||||||||| | ||||||||||    
T  40607389 tttctatttataaatttcttaaccattgccctgagggtactggttagcaa 40607438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 384 - 512
Target Start/End: Complemental strand, 15546787 - 15546659
Alignment:
Q  384 agggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaactta 483  Q
    |||||||| ||||||||  ||||||  ||| |||| |||||||| ||||  |||||| |  || ||| || |||||  ||| |||||| ||| ||| |||    
T  15546787 agggcacttgttaagaaacttaaaagagaaattttttcttggaattgatatattcaacatcttaaaacttaaaaaatgaactttttctgcatcaaattta 15546688  T
Q  484 taaattatttctatttttaaattcttaac 512  Q
    ||| |||||||||||||| | ||||||||    
T  15546687 taatttatttctattttttagttcttaac 15546659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 490 - 545
Target Start/End: Original strand, 20542477 - 20542533
Alignment:
Q  490 atttctatttttaaattc-ttaaccattgccctgagggcattggttagcaagaccct 545  Q
    |||||||||| || |||| ||||||| ||||||||||||| || |||||||||||||    
T  20542477 atttctatttgtagattccttaaccaatgccctgagggcactgtttagcaagaccct 20542533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 415 - 463
Target Start/End: Original strand, 26797869 - 26797917
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaa 463  Q
    |||||| |||||| ||||||||| || ||||| ||||||||||||||||    
T  26797869 ttttgttttggaactgatgcatttaacacattaaaagtttaaaaagtaa 26797917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 361 - 501
Target Start/End: Original strand, 32615798 - 32615938
Alignment:
Q  361 gggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaag 460  Q
    |||||||| |||| | | |||| |||||||| | |||||||||||||   ||| |||| |||||||| |  || |||||| |||||||||  |||||||     
T  32615798 gggaaatgttaacaagtgcccttagggcacttgataagaagtttaaagtagaaattttatcttggaattcgtgtattcaacacattgaaacattaaaaaa 32615897  T
Q  461 taacattttctacataaaacttataaattatttctattttt 501  Q
     ||| || | ||||| ||| |||| |||| |||||||||||    
T  32615898 caactttatttacatgaaagttatcaattgtttctattttt 32615938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 393 - 512
Target Start/End: Original strand, 44912176 - 44912296
Alignment:
Q  393 gttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacatttt-ctacataaaacttataaattat 491  Q
    ||||||||| ||||||| ||||  || | ||| |||||||  |||||| || || ||| ||||||||| ||  |||| |||||| ||| |||||| ||||    
T  44912176 gttaagaagcttaaaaaagaagagttatattgaaaatgatatattcaacaccttaaaactttaaaaaggaatttttttctacatcaaatttataatttat 44912275  T
Q  492 ttctatttttaaattcttaac 512  Q
    |||||||||||| || |||||    
T  44912276 ttctatttttaagtttttaac 44912296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 359 - 544
Target Start/End: Original strand, 4992 - 5176
Alignment:
Q  359 aagggaaatgctaaccattaccctgagggcactagttaagaagtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaa 458  Q
    |||||||||| ||| || | || |||| | ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||  || |||    
T  4992 aagggaaatgttaatcagtgccatgagagtactggttaagaaatttaaaaaggaagttttttcttggaaatgatgcattcaagacatttaaaagtttaaa 5091  T
Q  459 agtaacattttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagaccc 544  Q
    |||||  ||||||||| |||| |||||||||||||  ||||||||||||||||||||||||||||   || |||||||||||||||    
T  5092 agtaattttttctaca-aaaatttataaattattttcatttttaaattcttaaccattgccctgaaaacactggttagcaagaccc 5176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Original strand, 3983 - 4062
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    ||||||||| ||||| ||||| || ||||||||||||||| ||| ||||| ||| ||||| |||||||||| ||||||||    
T  3983 aaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttctaattttaaat 4062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Complemental strand, 3346 - 3267
Alignment:
Q  426 aaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 505  Q
    ||||||||| ||||| ||||| || ||||||||||||||| ||| ||||| ||| ||||| |||||||||| ||||||||    
T  3346 aaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttctaattttaaat 3267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 20172 - 20250
Alignment:
Q  415 ttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 493  Q
    |||||||||||||||||| ||||||| | ||||||| |||||||| |||| |||||||| ||||| |||| || |||||    
T  20172 ttttgtcttggaaatgatacattcaatatattgaaactttaaaaaataactttttctacttaaaatttatcaactattt 20250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 461
Target Start/End: Complemental strand, 48496 - 48435
Alignment:
Q  400 agtttaaaaaggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagt 461  Q
    |||||||||| |||  ||||| ||||||||||||||||||| | ||| ||||||||||||||    
T  48496 agtttaaaaatgaaaatttgtattggaaatgatgcattcaatatattaaaagtttaaaaagt 48435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 507 - 545
Target Start/End: Complemental strand, 39574 - 39536
Alignment:
Q  507 cttaaccattgccctgagggcattggttagcaagaccct 545  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  39574 cttaaccattgccctgagggcttcggttagcaagaccct 39536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 34400 - 34481
Alignment:
Q  465 attttctacataaaacttataaattatttctatttttaaattcttaaccattgccctgagggcattggttagcaagacccta 546  Q
    ||||||||| ||||| | ||||||||||||   |||||||| |||||||| ||| || | |||| |||||| ||||||||||    
T  34400 attttctacctaaaattcataaattatttcctcttttaaatccttaaccactgctcttaaggcactggttaacaagacccta 34481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 476 - 512
Target Start/End: Original strand, 5299 - 5335
Alignment:
Q  476 aaaacttataaattatttctatttttaaattcttaac 512  Q
    |||| |||| |||||||||||||||||||||||||||    
T  5299 aaaagttatcaattatttctatttttaaattcttaac 5335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 417 - 521
Target Start/End: Complemental strand, 80055 - 79951
Alignment:
Q  417 ttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaattcttaaccatt 516  Q
    |||| ||||||||| |||| ||||   ||||||| |||||||  |||| |||||||||||||| | || ||| |||| ||||| |  ||||||||| |||    
T  80055 ttgtattggaaatggtgcactcaatgtattgaaactttaaaatataactttttctacataaaattcatcaataatttttatttatgtattcttaacaatt 79956  T
Q  517 gccct 521  Q
    |||||    
T  79955 gccct 79951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University