View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_low_5 (Length: 533)
Name: NF7865_low_5
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 11605916 - 11606343
Alignment:
| Q |
1 |
aagctattctgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaaggcgaag |
100 |
Q |
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| T |
11605916 |
aagctattctgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaaggcgaag |
11606015 |
T |
|
| Q |
101 |
attgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttctggatctttgtcttccaatgcatcatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
11606016 |
attgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttcaggatctttgtcttccaatgcatcatct |
11606115 |
T |
|
| Q |
201 |
ctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagtaaccaac |
300 |
Q |
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| T |
11606116 |
ctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagtaaccaac |
11606215 |
T |
|
| Q |
301 |
tcagtttgtccaataaaaatgatactgaactatctgccattttcttctctcaactttttactgtcttgccttaaatttctaactctctcttcnnnnnnng |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11606216 |
tcagtttgtccaataaaaatgatactgaactatctgccattttcttctctcaactttttactgtcttgccttaaatttctaactctctcttctttttttg |
11606315 |
T |
|
| Q |
401 |
tgcgctctcaagaaccttgatgatgaga |
428 |
Q |
| |
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| T |
11606316 |
tgcgctctcaagaaccttgatgatgaga |
11606343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 11640133 - 11639806
Alignment:
| Q |
13 |
gtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaaggcgaagattgtattcatc |
112 |
Q |
| |
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|||||| |||||||||||| || ||||| ||| ||||||| ||||||| |||| | || |||||| ||||||||||||||||||||| ||||||||| |
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| T |
11640133 |
gtctagctttcatggtcttaattccaaaaacaatcttgtgataagaaga---tttgattttgccttgttgatgatcgacaaggcgaagatagtattcatc |
11640037 |
T |
|
| Q |
113 |
tatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttctggatctttgtcttccaatgcatcatctctcgttaagatg |
212 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||| |||| || | | |||||| |
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| T |
11640036 |
tatagcatcttccatgtcttgagcaatatctcttactcttttaacccatactttgagttcagggtctttgtcttccaatgaatcagctaacatcaagatg |
11639937 |
T |
|
| Q |
213 |
gcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagtaaccaactcagtttgtcca |
312 |
Q |
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| T |
11639936 |
gacttgtggcgttcaagttcgtctttgatgtattgaacatcttcacggactcctctttgtagatttacttcctcttgaagtaaccatgttagcttgtcca |
11639837 |
T |
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| Q |
313 |
ataaaaatgatactgaactatctgccatttt |
343 |
Q |
| |
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| T |
11639836 |
ataaaaatgatactgaactgtctgccatttt |
11639806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 11621654 - 11621317
Alignment:
| Q |
1 |
aagctattctgtgtctaggtttcatggtcttgatgtcaaaagcaaccttgtgaaaagaagaatttttgttgttcccttgtcgatgatcgacaaggcgaag |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||||||| ||| | ||| || |||||||||| |||| | || | || |||||| ||||||||||||||||||| |
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| T |
11621654 |
aagctattttgtgtctagctttcatggtcttaatgccgaaaagaatcttgtgaaaataaga---tctgatttttccttgttgatgatcgacaaggcgaag |
11621558 |
T |
|
| Q |
101 |
attgtattcatctatagcatcttccatatcttgagcaatatctcttacccttttaacccatactttgagttctggatctttgtcttccaatgcatcatct |
200 |
Q |
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|| |||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||||| || |||| || |
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| T |
11621557 |
atagtattcatctatagcatcttccatgtcttgagcaataactctaacccttttaacccatactttgagttcagggtctttgtcttccattgaatcagct |
11621458 |
T |
|
| Q |
201 |
ctcgttaagatggcattgtggcgtttgagttcgtctttgatgtattgaacatcttcacggacccctttttgtagaattacttcttcttgaagtaaccaac |
300 |
Q |
| |
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| | |||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||||| |
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| T |
11621457 |
gccatcaagatggccttgtggcgttcgagttcgtcgttgatgtattgaacatcttcacggacgcctctttgtagatttacctcttcttgaagtaaccaag |
11621358 |
T |
|
| Q |
301 |
tcagtttgtccaataaaaatgatactgaactatctgccatt |
341 |
Q |
| |
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| || || ||||| ||||||||||||||||| ||||||||| |
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| T |
11621357 |
ttagcttctccaacaaaaatgatactgaactctctgccatt |
11621317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 465 - 516
Target Start/End: Original strand, 11606376 - 11606427
Alignment:
| Q |
465 |
gataagactagttgcaaattaattgtaaggacttggtgatgaggtttatgat |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11606376 |
gataagactagttgcaaattaattgtaaggacttggtgatgaggtttatgat |
11606427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 516
Target Start/End: Complemental strand, 25042132 - 25042085
Alignment:
| Q |
465 |
gataagactagttgcaaattaattgtaaggacttggtgatgaggtttatgat |
516 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25042132 |
gataagactagttgcaaatt----gtaaggacttggtgatgaggtttatgat |
25042085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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