View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7865_low_6 (Length: 502)
Name: NF7865_low_6
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Original strand, 39076935 - 39077402
Alignment:
| Q |
19 |
gatgttgatagacacaagtgatagagttgatataattatatgtttaatgaaaaaccagaaatgataaagnnnnnnnnnnnnggttcaatctcaatgaaat |
118 |
Q |
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| T |
39076935 |
gatgttgatagacacaagtgatagagttgatataattatatgtttaatgaaaaaccagaaatgataaagaaaaaaaaaaa-ggttcaatctcaatgaaat |
39077033 |
T |
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| Q |
119 |
gtttatttatatatgggctatatgatctgttcatactttctttatgaattgatttatagatagatacacatcacatggcatggaagtgaaaatgaattat |
218 |
Q |
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| T |
39077034 |
gtttatttat-----ggctatatgatctgttcatactttctttatgaa-tgattt----gtagatacacatcacatggcatggaagtgaaaatgaattat |
39077123 |
T |
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| Q |
219 |
cttcattggtaattgtaaccatgaagatcatagaaacgggacccataacacatctttaattacttgtgtcagc---attgatgaatttgagacattattt |
315 |
Q |
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| T |
39077124 |
cttcattggtaattgtaaccatgaagatcatagaaaggggacccataacacatctttaattacttgtgtcagcaatattgatgaatttgagacattattt |
39077223 |
T |
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| Q |
316 |
agaat-ggattgattgaattttttcactgacatgcaatgcaatgtagggcaaggagagttgataataatacaacaaatattaattaatgttattgaaaat |
414 |
Q |
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| T |
39077224 |
agaatgggattgattgaattttttcactgacatgcaatgcaatgtagggcaaggagagttgataataatacaacaaat----actaatgttattgaaaat |
39077319 |
T |
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| Q |
415 |
caattaacaacgaatataaagtgacaatgattgaagtttgtgtctcagacaagatgctgttgttataaatgtcaccaccaaac |
497 |
Q |
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| T |
39077320 |
caattaacaacgaatataaagtgacaatgattgaaatttgtgtctcagacaagatgctgttgttataaatgtcaccaccaaac |
39077402 |
T |
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