View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7865_low_9 (Length: 430)
Name: NF7865_low_9
Description: NF7865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7865_low_9 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 59 - 414
Target Start/End: Original strand, 271560 - 271914
Alignment:
| Q |
59 |
attgtggttgcagctaagagtctcaggtttaatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaa |
158 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
271560 |
attgtggttgcagctaagagtctcaggtttaatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaa |
271659 |
T |
|
| Q |
159 |
caagccatgtgtttctttcttgttccagaaacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatg |
258 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
271660 |
caagccatgtgtttctttcttgatccagaaacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatg |
271759 |
T |
|
| Q |
259 |
ataatcaatctaggactgcttttaaggtaaatcaacaaaataattaattaaggtcttcatttcgtttatgtttgatgatcatatatataaatgatggcat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
271760 |
ataatcaatctaggactgcttttaaggtaaatcaacaaaat-attaattaaggtcttcatttcgtttatgtttgatgatcatatatataaatgatggcat |
271858 |
T |
|
| Q |
359 |
aatgcaatttatttcagacaatgtggcaagggatggatggtttgagaggtcctggt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
271859 |
aatgcaatttatttcagacaatgtggcaagggatggatggtttgagaggtcctggt |
271914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 69 - 287
Target Start/End: Complemental strand, 17582106 - 17581888
Alignment:
| Q |
69 |
cagctaagagtctcaggtttaatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaacaagccatgt |
168 |
Q |
| |
|
|||||||| || ||||| ||||||||||||| ||||||||||||| | || ||||||||| |||||||||| |||| |||||||||||| |||||| |
|
|
| T |
17582106 |
cagctaagggtttcagggctaatcagcaatggcccttatgtacttgtcttagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgt |
17582007 |
T |
|
| Q |
169 |
gtttctttcttgttccagaaacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatgataatcaatc |
268 |
Q |
| |
|
| || ||||||| ||| |||||||| ||| || |||| ||||| |||||||||||||||||||||||||| ||||| ||||| || ||||||| ||| | |
|
|
| T |
17582006 |
gcttttttcttgatcctgaaacctccaaagatcttgcttttgtccaattccctcaaatgtttcacaacctcagcaagaaagatatatatgatagtcaggc |
17581907 |
T |
|
| Q |
269 |
taggactgcttttaaggta |
287 |
Q |
| |
|
||||| |||||||| |||| |
|
|
| T |
17581906 |
taggaatgcttttacggta |
17581888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 88 - 287
Target Start/End: Original strand, 15510 - 15709
Alignment:
| Q |
88 |
taatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaacaagccatgtgtttctttcttgttccaga |
187 |
Q |
| |
|
|||||||||||||||||||||| |||| || || ||||||||| |||||||||| |||| |||||||||||| | ||||| || ||||||| ||| || |
|
|
| T |
15510 |
taatcagcaatggaccttatgttcttgtggtagattgtgatatgaattgtaatgatgcatcatcagccaaacaatctatgtgcttttttcttgatcctga |
15609 |
T |
|
| Q |
188 |
aacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatgataatcaatctaggactgcttttaaggta |
287 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||| |||| |
|
|
| T |
15610 |
aacctctaaagatgttgcttttgttcaattccctcaaatgtttcacaaccttagcaagaaagacatatatgatagtcagactaggactgcttttacggta |
15709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 88 - 287
Target Start/End: Complemental strand, 16383180 - 16382981
Alignment:
| Q |
88 |
taatcagcaatggaccttatgtacttgcagtggactgtgatatgtattgtaatgacccatcttcagccaaacaagccatgtgtttctttcttgttccaga |
187 |
Q |
| |
|
||||||||||||| |||||||| ||| || || ||||||||| |||||||||| |||| |||||||||||| ||||||| || ||||||| ||| | |
|
|
| T |
16383180 |
taatcagcaatggcccttatgttcttattgtagattgtgatatgaattgtaatgattcatcatcagccaaacaatccatgtgcttttttcttgatcctaa |
16383081 |
T |
|
| Q |
188 |
aacctctaaatatattgcatttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatgataatcaatctaggactgcttttaaggta |
287 |
Q |
| |
|
|| ||| || || |||| ||||| |||||||||||||||||||||||| ||||||| |||||||| ||| ||| | | |||||| |||||||| |||| |
|
|
| T |
16383080 |
aatatctcaagatcttgcttttgtccaattccctcaaatgtttcacaacattagcaagaaagacatatataatagtgaggctaggaatgcttttacggta |
16382981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 34818723 - 34818671
Alignment:
| Q |
207 |
tttgttcaattccctcaaatgtttcacaaccttagcaaaaaagacatctatga |
259 |
Q |
| |
|
||||||||||| ||||| | ||||||||| ||||||| |||||||||||||| |
|
|
| T |
34818723 |
tttgttcaatttcctcagaaatttcacaacattagcaagaaagacatctatga |
34818671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University