View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7866_low_2 (Length: 465)
Name: NF7866_low_2
Description: NF7866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7866_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 209 - 450
Target Start/End: Original strand, 34584545 - 34584780
Alignment:
| Q |
209 |
ggataagtggactgtacaagaaaacaggacttaaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
308 |
Q |
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| T |
34584545 |
ggataagtggactgttcaagaaaacaggacttaaaaag------tcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttt |
34584638 |
T |
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| Q |
309 |
tgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctattcagttgaagtgtgtttactcatacttgctgatgc |
408 |
Q |
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| T |
34584639 |
tgtatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttttattcagttgaagagtgtttactcatacttgctgatgc |
34584738 |
T |
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| Q |
409 |
ccattggtttgccttgctgatccacttttctattcatgtttc |
450 |
Q |
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| T |
34584739 |
ccatttgtttgccttgctgatccacttttctattcatgtttc |
34584780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 34583158 - 34583071
Alignment:
| Q |
118 |
ttgtcgactctttattagagttttgttgttatctggagggttattgggagagtgacattggtcgccatggcaaaaattgagttaaaaa |
205 |
Q |
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| T |
34583158 |
ttgtcgactctttattagagttttgttgttatctggagggttattgggagagtgacattggtcgccatggcaaaaattgagttaaaaa |
34583071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 406
Target Start/End: Original strand, 34586015 - 34586174
Alignment:
| Q |
241 |
aaaaagagggattcaatgtctgttattttttagatatataaatgtccattcatttttactcttgcttttgaatatgttgtcaagagtcccttgaa----t |
336 |
Q |
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| T |
34586015 |
aaaaagagggattcaaagtctgttatattttagttatataa-----------tttttactcttgcttttgtatatgttgt-tagagtccctgaaatcttt |
34586102 |
T |
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| Q |
337 |
cttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtttactcatacttgctgat |
406 |
Q |
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| T |
34586103 |
cttttcttcaatagattgttttgaaattatcttttatgatcaggtgaagtgtgtttactcatacttgctgat |
34586174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 292 - 430
Target Start/End: Original strand, 19179735 - 19179873
Alignment:
| Q |
292 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
389 |
Q |
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| T |
19179735 |
atttttactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
19179832 |
T |
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| Q |
390 |
tactcatacttgctgatgcccattggtttgccttgctgatc |
430 |
Q |
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| T |
19179833 |
tactcatacttgctgatgccctttactttgccttgcagatc |
19179873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 292 - 410
Target Start/End: Original strand, 1478115 - 1478233
Alignment:
| Q |
292 |
atttttactcttgcttttgaatatgttgtcaagagtcccttgaatcttttcttcaataaattgttttgaaattatcttctat--tcagttgaagtgtgtt |
389 |
Q |
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| T |
1478115 |
attttaactcttgcttttgtatatgttgtca-gagtcccttgaatcttttcttaaatagattgttttgaaattgtcttttatgagcagttg-agtgtgtt |
1478212 |
T |
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| Q |
390 |
tactcatacttgctgatgccc |
410 |
Q |
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| T |
1478213 |
tactcatacttgctgatgccc |
1478233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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