View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7867_low_1 (Length: 787)

Name: NF7867_low_1
Description: NF7867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7867_low_1
NF7867_low_1
[»] chr2 (1 HSPs)
chr2 (18-768)||(37136056-37136809)


Alignment Details
Target: chr2 (Bit Score: 687; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 687; E-Value: 0
Query Start/End: Original strand, 18 - 768
Target Start/End: Complemental strand, 37136809 - 37136056
Alignment:
Q  18 gttcaaagctcaaattttcagagtattggtaatcatgtgaatcacttggaggagtaaaattctggttgaaaagatttgatga---agatggataaggtga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  37136809 gttcaaagctcaaattttcagagtattggtaatcatgtgaatcacttggaggagtaaaattctggttgaaaagatttgatgatgaagatggataaggtga 37136710  T
Q  115 aagtgaaggtgatttttgcaaagcaagagtttcattaatctcaatgttttcatcattggaaaagttgaattgtggacatggattggtgttgtgattatta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  37136709 aagtgaaggtgatttttgcaaagcaagagtttcattaatctcaatgttttcatcattggaaaagttgaattgtggacatggattggtgttgtgattgtta 37136610  T
Q  215 gcagaaccagagttgttctctagaagattataatcataatggtttggatcatcaatcttcttagggtaacaagaagataagagtaaagaaaatgataatg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136609 gcagaaccagagttgttctctagaagattataatcataatggtttggatcatcaatcttcttagggtaacaagaagataagagtaaagaaaatgataatg 37136510  T
Q  315 atgaagaagataaaggttgatgttgtagttgcaatagtttatcattgtatgcaatagcttctgcttggatttctggaggataaagaggtaagccggctct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37136509 atgaagaagataaaggttgatgttgtagttgcaatagtttatcattgtatgcaatagcttctgcttggatttctggaggataaagaggtaagccggctct 37136410  T
Q  415 ttgacaccttttcattcttgtgttccaaaagtttttgatttcgttatctgttcttccgggcaactgaaaaaataacaaaacattttcaggtgctcggaaa 514  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  37136409 ttgacgccttttcattcttgtgttccaaaagtttttgatttcgttatctgttcttccgggcaactgaaaaaacaacaaaacattttcaggtgctcggaga 37136310  T
Q  515 aagannnnnnnataaacaaatgttaatagttaatttgtgtgcagtaaagatcgaattgaactcttaatactttatcgagaaacaataaacaagttctacc 614  Q
    ||||       ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37136309 aagatttttttataaacaaatgttaatagttaatttgtttgcagtaaagatcgaattgaactcttaatactttaccgagaaacaataaacaagttctacc 37136210  T
Q  615 aagcaaacttctcaacaaataatttgtatcaagcaaagtacacaaaagacataaagatgagtattttagccttaaatgagagcttttagaaagtagggca 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37136209 aagcaaacttctcaacaaataatttgtatcaagcaaagtacacaaaagacataaagatgagtattttaaccttaaatgagagcttttagaaagtagggca 37136110  T
Q  715 catatttgaaagaaagaaacaaaaatggcaatttgatattcagacaatgattga 768  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  37136109 catatttgaaagaaacaaacaaaaatggcaatttgatattcagacaatgattga 37136056  T

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