View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7867_low_3 (Length: 412)
Name: NF7867_low_3
Description: NF7867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7867_low_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 3117897 - 3117491
Alignment:
| Q |
6 |
atatgttcattcaaaaggagtgatggtggatgatgaatatgtgttaatgggatctgccaacataaaccaaagatcaatggaaggcactagagacacagaa |
105 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3117897 |
atatgttcattcaaaaggaatgatagtggatgatgaatatgtgttaatgggatctgccaacataaaccagaggtcaatggaaggcactagagacacagaa |
3117798 |
T |
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| Q |
106 |
attgcaatgggagcatatcagcctaatcatacttgggcaaccaagaaatccaaccctcatggccaggtaagatactaagatttatggattcagaagcact |
205 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3117797 |
attgcaatggcagcatatcagcctaatcatacttgggcaaccaagaaatccaaccctcatggccaggtaagatactaagatttatggattcagaagcact |
3117698 |
T |
|
| Q |
206 |
tctataacaagccataaacgtttatcatataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtatgtgtttagg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3117697 |
tctataacaagccataaacgtttatcatataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcacgtgtatgtgtttagg |
3117598 |
T |
|
| Q |
306 |
tacatggctatagaatgtcactatggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtc |
405 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3117597 |
tacatggttatagaatgtcactatggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtc |
3117498 |
T |
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| Q |
406 |
attgagt |
412 |
Q |
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||||||| |
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| T |
3117497 |
attgagt |
3117491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 412
Target Start/End: Complemental strand, 3111401 - 3110995
Alignment:
| Q |
6 |
atatgttcattcaaaaggagtgatggtggatgatgaatatgtgttaatgggatctgccaacataaaccaaagatcaatggaaggcactagagacacagaa |
105 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
3111401 |
atatgttcattcaaaaggaatgatagtggatgatgaatatgtgttaatgggatctgccaacataaaccagaggtcaatggaaggcactagagacacagaa |
3111302 |
T |
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| Q |
106 |
attgcaatgggagcatatcagcctaatcatacttgggcaaccaagaaatccaaccctcatggccaggtaagatactaagatttatggattcagaagcact |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111301 |
attgcaatgggagcatatcagcctaatcatacttgggcaaccaagaaatccaaccctcatggccaggtaagatactaagatttatggattcagaagcact |
3111202 |
T |
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| Q |
206 |
tctataacaagccataaacgtttatcatataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtatgtgtttagg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3111201 |
tctataacaagccataaacgtttatcatataagtgcttatgtatgctgctagctttttatgatgattgtgttgtgtttggtgcatgtgtatgtgttcagg |
3111102 |
T |
|
| Q |
306 |
tacatggctatagaatgtcactatggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtc |
405 |
Q |
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| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111101 |
tgcatggctatagaatgtcattgtggagtgagcacataggaggtgtggaagaatgtttcaagcaaccagagagcattgaatgtgtgagaagaataaggtc |
3111002 |
T |
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| Q |
406 |
attgagt |
412 |
Q |
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||||||| |
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| T |
3111001 |
attgagt |
3110995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 9157523 - 9157582
Alignment:
| Q |
26 |
tgatggtggatgatgaatatgtgttaatgggatctgccaacataaaccaaagatcaatgg |
85 |
Q |
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|||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||| |
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| T |
9157523 |
tgatcgtggatgatgaatatgttatattgggatctgccaacataaaccaaagatctatgg |
9157582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 145
Target Start/End: Original strand, 28535289 - 28535428
Alignment:
| Q |
6 |
atatgttcattcaaaaggagtgatggtggatgatgaatatgtgttaatgggatctgccaacataaaccaaagatcaatggaaggcactagagacacagaa |
105 |
Q |
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|||||||||||||||||| |||| || ||||||||||||||| || |||| || || ||||| |||||| | || |||||||| || || |||| || |
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| T |
28535289 |
atatgttcattcaaaaggcatgatagttgatgatgaatatgtgatagtgggctccgcaaacattaaccaacgctctatggaaggaacaagggacagtgag |
28535388 |
T |
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| Q |
106 |
attgcaatgggagcatatcagcctaatcatacttgggcaa |
145 |
Q |
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| T |
28535389 |
attgcaatgggagcataccaacctcatcatacctgggcaa |
28535428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 45078208 - 45078239
Alignment:
| Q |
218 |
cataaacgtttatcatataagtgcttatgtat |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45078208 |
cataaacgtttatcatataagtgcttatgtat |
45078239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 44663641 - 44663711
Alignment:
| Q |
55 |
ggatctgccaacataaaccaaagatcaatggaaggcactagagacacagaaattgcaatgggagcatatca |
125 |
Q |
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| T |
44663641 |
ggatctgccaacatcaaccaaagatcaatggatggtgctagagactctgaaattgcaatgggagcttatca |
44663711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 12690952 - 12690840
Alignment:
| Q |
7 |
tatgttcattcaaaaggagtgatggtggatgatgaatatgtgttaatgggatctgccaacataaaccaaagatcaatggaaggcactagagacacagaaa |
106 |
Q |
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||||||||||| ||||| |||| || ||||||||||||||| | || ||||| || ||||| ||||| | || |||||||| || || ||||| || | |
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| T |
12690952 |
tatgttcattcgaaaggcatgatagttgatgatgaatatgtgatcattggatcagcaaacatcaaccagcgctctatggaaggaacaagggacactgaga |
12690853 |
T |
|
| Q |
107 |
ttgcaatgggagc |
119 |
Q |
| |
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||||||||||||| |
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| T |
12690852 |
ttgcaatgggagc |
12690840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 250
Target Start/End: Original strand, 18264247 - 18264278
Alignment:
| Q |
219 |
ataaacgtttatcatataagtgcttatgtatg |
250 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
18264247 |
ataaacgtttatcatataagtgcttatgtatg |
18264278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 49520413 - 49520342
Alignment:
| Q |
64 |
aacataaaccaaagatcaatggaaggcactagagacacagaaattgcaatgggagcatatcagcctaatcat |
135 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||| ||||||||||| |||| ||| ||| ||||| |
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| T |
49520413 |
aacataaaccaaagatcaatggatggtggaagagacacagagattgcaatgggtgcatttcaacctcatcat |
49520342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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