View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7867_low_5 (Length: 247)
Name: NF7867_low_5
Description: NF7867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7867_low_5 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 36588937 - 36588730
Alignment:
| Q |
26 |
tcaaaacccagtaccactaaaagcctttcttctcattgctaaactcaaatccacaagcaaagttaacaagcacatgaaatcaaagttaaaatctcaaacc |
125 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
36588937 |
tcaaaacccagtaccactaaaagcctttcttcttcatgctaaactcaaatccacaagcaaagttaacaagcacatgaaagcaaagttaaaatcccaaacc |
36588838 |
T |
|
| Q |
126 |
aacattctgttattgcaacacaaagctagcacaacaacagggaaaattcatcaccaagttcatcccaaacccaaaatctaatagggggaaaaattcggtt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |||| |
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| T |
36588837 |
aacattctgttattgcaacacaaagctagcacaacaacaaggaaaattcatcaccaagttcatcccaaacccaaaatctaaaagaggggaaaattaggtt |
36588738 |
T |
|
| Q |
226 |
ttatattt |
233 |
Q |
| |
|
|||||||| |
|
|
| T |
36588737 |
ttatattt |
36588730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 45619291 - 45619087
Alignment:
| Q |
29 |
aaacccagtaccactaaaagcctttcttctcattgctaaactcaaatccacaagcaaagttaacaagcacatgaaatcaaagttaaaatctcaaaccaac |
128 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
45619291 |
aaacccagtactactaaaagcctttcttcttcatgctaaactcaaatccacaagcaaagttaacaagcacatgaaagcaaagttaaaatcccaaaccaac |
45619192 |
T |
|
| Q |
129 |
attctgttattgcaacacaaagctagcacaacaacagggaaaattcatcaccaagttcatcccaaacccaaaatctaatagggggaaaaattcggtttta |
228 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| ||||||| |
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| T |
45619191 |
attttgttattgcaacacaaagctagcacaacaacagggaaaattcatcaccaagttcatcccaaaaccaaaatctaaaaggggggaaaattaggtttta |
45619092 |
T |
|
| Q |
229 |
tattt |
233 |
Q |
| |
|
||||| |
|
|
| T |
45619091 |
tattt |
45619087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 26 - 233
Target Start/End: Complemental strand, 3937606 - 3937398
Alignment:
| Q |
26 |
tcaaaacccagtaccactaaaagcctttcttctcattgctaaactcaaatccacaagcaaagtt-aacaagcacatgaaatcaaagttaaaatctcaaac |
124 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||| |
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|
| T |
3937606 |
tcaaaacccagtaccactaaaagtctttcttcttcatgctaaactcaaatccacaagcaaagtttaacaagcacatgaaagcaaagttaaaattccaaac |
3937507 |
T |
|
| Q |
125 |
caacattctgttattgcaacacaaagctagcacaacaacagggaaaattcatcaccaagttcatcccaaacccaaaatctaatagggggaaaaattcggt |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||| ||| |
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|
| T |
3937506 |
caacattctgttattgcaacacaaagctagcacaacaacagggaaaattcatcaccaagttcattccaaacccaaaatctaaaaggggggaaaattaggt |
3937407 |
T |
|
| Q |
225 |
tttatattt |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
3937406 |
tttatattt |
3937398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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