View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_high_10 (Length: 343)
Name: NF7868_high_10
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 8047242 - 8046917
Alignment:
| Q |
1 |
tattttagtagtacct-accataaatcagatttctccagttgttcgaagaattcaatcaatgannnnnnnngaaaaaggaattccttcaatgattgatta |
99 |
Q |
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| T |
8047242 |
tattttagtagtaccttaccataaatcagacttctccagttgttcgaagaattcaatcaatgattttttttgaaaaaggaattccttcaatgattgatta |
8047143 |
T |
|
| Q |
100 |
tgaacatctttatctttatatatataaatgttagacagcaagtagctctgattaaccctaatcccaccnnnnnnnattaacttaaaaaatctttatgnnn |
199 |
Q |
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| T |
8047142 |
tgaacat-tttatctttatatatataaatgttagacagcaagtagctctgattaatcctaatcccacctttttttattaacttaaaaaatctttatgaaa |
8047044 |
T |
|
| Q |
200 |
nnnnttctctttcgagaatcaaacccgagaccaata--gcttctcctcaacattttgaccactaaaccactaacaannnnnnngatttaattttgtttcc |
297 |
Q |
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|||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |
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| T |
8047043 |
aaaa-tctcttccgagaattaaacccgagaccaatagcgcttctcctcaacattttgaccactataccactaacaatttttttgatttaattttatttcc |
8046945 |
T |
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| Q |
298 |
attaattgatattaatcattattttaag |
325 |
Q |
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| T |
8046944 |
attaattgatattaatcattattttaag |
8046917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 309
Target Start/End: Original strand, 1068627 - 1068699
Alignment:
| Q |
237 |
cttctcctcaacattttgaccactaaaccactaacaannnnnnngatttaattttgtttccattaattgatat |
309 |
Q |
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| T |
1068627 |
cttcttctcaacattttgaccactaaaatactaacaattttcttgatttaattttgtttctattaattaatat |
1068699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Complemental strand, 11042225 - 11042196
Alignment:
| Q |
105 |
atctttatctttatatatataaatgttaga |
134 |
Q |
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| T |
11042225 |
atctttatctttatatatataaatgttaga |
11042196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 32137272 - 32137240
Alignment:
| Q |
105 |
atctttatctttatatatataaatgttagacag |
137 |
Q |
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| T |
32137272 |
atctttatctttatatgtataaatgttagacag |
32137240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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