View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_high_12 (Length: 262)
Name: NF7868_high_12
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 46734362 - 46734119
Alignment:
| Q |
1 |
tgagatgttgattcgccgtgtccgcaccccgccacacacctgatagcctcggcttgaataaaaccacggcgcaaaagattgttttttgttggcagcctat |
100 |
Q |
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| T |
46734362 |
tgagatgctgattcgccgtgtccgcaccccgtcacgcacctgatagcctcggcttgaataataccacggtgcaaaagattgttttttgttggcagcctat |
46734263 |
T |
|
| Q |
101 |
cgtgcatcaatctccaagcaagaattttagataatgggttgaaaagagattgtttacaacactcccaaataaataatataaatggagaatagataaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734262 |
cgtgcatcaatctccaagcaagaattttagataaagggttgaaaagagattgtttacaacactcccaaataaataatataaatggagaatagataaatga |
46734163 |
T |
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| Q |
201 |
agtaaatttaaattcctaattccaaaattcgtttgtgtattttc |
244 |
Q |
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| T |
46734162 |
agtaaatttaaattcctaattccaaaattcgtttgtgtattttc |
46734119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 34337841 - 34337945
Alignment:
| Q |
21 |
tccgcaccccgccacacacctgatagcctcggcttgaataaaaccacggcgcaaaagattgttttttgttggcagcctatcgtgcatcaatctccaagca |
120 |
Q |
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||||||||||||||||||||| || || ||||| |||| ||||| || | || || |||||||||||||||||||| ||| ||||||||||||| |
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| T |
34337841 |
tccgcaccccgccacacacctaatgttgtcagcttggataatgccacgtcgaatgaggttattttttgttggcagcctatcacgcaacaatctccaagca |
34337940 |
T |
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| Q |
121 |
agaat |
125 |
Q |
| |
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||||| |
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| T |
34337941 |
agaat |
34337945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 21548160 - 21548117
Alignment:
| Q |
82 |
ttttttgttggcagcctatcgtgcatcaatctccaagcaagaat |
125 |
Q |
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| T |
21548160 |
ttttttgttggcagcctataatgcaacaatctccaagcaagaat |
21548117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 125
Target Start/End: Original strand, 33281048 - 33281151
Alignment:
| Q |
22 |
ccgcaccccgccacacacctgatagcctcggcttgaataaaaccacggcgcaaaagattgttttttgttggcagcctatcgtgcatcaatctccaagcaa |
121 |
Q |
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||||||||| |||||||||| || || ||||| |||| ||||| |||| ||| || ||||||||||||||||| || ||| |||||||||||||| |
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| T |
33281048 |
ccgcaccccaccacacacctaatgttgtccgcttggataatgccacgccgcataaggttattttttgttggcagcctgtcacgcaacaatctccaagcaa |
33281147 |
T |
|
| Q |
122 |
gaat |
125 |
Q |
| |
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|||| |
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|
| T |
33281148 |
gaat |
33281151 |
T |
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