View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_high_5 (Length: 456)
Name: NF7868_high_5
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_high_5 |
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| [»] scaffold0245 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 1313559 - 1313978
Alignment:
| Q |
20 |
tttacctccttctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatca |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
1313559 |
tttacctccttctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacggacgaactctcctgaacaaatcatgttagcatca |
1313658 |
T |
|
| Q |
120 |
atgcttaaaacaacaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
1313659 |
atgcttaaaacaacaccaagcactatagcaatgtttcaaagtgcgaaccagattacaatagctccttttccctgggaactagaaggtctatgcccaaaaa |
1313758 |
T |
|
| Q |
220 |
attgcaagcactataccaaggctgtgtttagattgacaaacgggatgaaatggaatcgtaaaaactataaaatagttgaattctttaaaataggatatga |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1313759 |
attgcaagcactataccaaggctgtgtttagattgacaaacaggatgaaatggaatcgtaaaaactataccatagttgaattctttaaaataggatatga |
1313858 |
T |
|
| Q |
320 |
tggaacaaaccccatcccattccatcgaatacctagcttttttcttccactcaaatttggggaataataaaattaaacgtgtgtttttctgcattcaatt |
419 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1313859 |
tggaacgaaccccatcccattccatcgaatacctagcttttttcttccactcaaatttggggaataataaaattaaacgtgtgtttttctgcattcaatc |
1313958 |
T |
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| Q |
420 |
gttaaatatctgaacagtat |
439 |
Q |
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|||||||||| ||||||||| |
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| T |
1313959 |
gttaaatatccgaacagtat |
1313978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1294548 - 1294757
Alignment:
| Q |
20 |
tttacctccttctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatca |
119 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||| |
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| T |
1294548 |
tttacctccttctttttcgacctagtagaagcagaactatcctgtgtttcttttgaagtgctaatggacgaactctcctgaacaaaccatgttaacatca |
1294647 |
T |
|
| Q |
120 |
atgcttaaaacaacaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1294648 |
atgcttaaaacaacaccaagcactatagcaatgtttcaaagtgcgaaccacattacaatagctccttttccctaggaactagaaggtttatgcccaaaaa |
1294747 |
T |
|
| Q |
220 |
attgcaagca |
229 |
Q |
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|||||||||| |
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| T |
1294748 |
attgcaagca |
1294757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 22458 - 22667
Alignment:
| Q |
20 |
tttacctccttctttttcaaccttgtagaagcagaactatcctgtgtttcttttgaagtgctaacagacaaactctcctgaacaaatcatgttagcatca |
119 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||| |
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| T |
22458 |
tttacctccttctttttcgacctagtagaagcagaactatcctgtgtttcttttgaagtgctaatggacgaactctcctgaacaaaccatgttaacatca |
22557 |
T |
|
| Q |
120 |
atgcttaaaacaacaccaagcactatagcaatgtttcaaagtgtgaaccagattacaatagctccttttccctaggaactagaaggtttatgcccaaaaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22558 |
atgcttaaaacaacaccaagcactatagcaatgtttcaaagtgcgaaccacattacaatagctccttttccctaggaactagaaggtttatgcccaaaaa |
22657 |
T |
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| Q |
220 |
attgcaagca |
229 |
Q |
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|||||||||| |
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| T |
22658 |
attgcaagca |
22667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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