View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7868_high_8 (Length: 382)
Name: NF7868_high_8
Description: NF7868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7868_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 19 - 364
Target Start/End: Original strand, 15360098 - 15360443
Alignment:
| Q |
19 |
gtatatgtatatgatcattttcannnnnnnncagtagtccactgaagtaagatttaaattgaggaatcataacaaaaagagcatagttatcattaattag |
118 |
Q |
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| T |
15360098 |
gtatatgtatatgatcattttcattttttttcagtagtccactgaagtaagatttaaattgaggaatcataacaaaaagagcatagttatcattaattag |
15360197 |
T |
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| Q |
119 |
tctaacaggtatgagttgtcatttcaattcaatgtgttctttactttgctcctgttaatggcttagggtagggtagtcttcagagtgcccagggaattcc |
218 |
Q |
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| T |
15360198 |
tctaacaggtatgagttgtcatttcaattcaatgtattctttactttgctcctgttaatggcttagggtagggtagtcttcagagtgcccagggaattcc |
15360297 |
T |
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| Q |
219 |
agtttggctttnnnnnnntagtagaaagaaaatttatcttgaattaatgttgaactcaacgatttattttccagctgataatcaaagtagatttttaatc |
318 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15360298 |
agtttggctttaaaaaaatagtagaaagaaaatttatcttgaattaatgttgaactcaacgatttattttccagctgataatcaaagtagatttttaatc |
15360397 |
T |
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| Q |
319 |
attcttgcatctctattgattcttattattgtttcatgcaactaca |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15360398 |
attcttgcatctctattgattcttattattgtttcatgcaactaca |
15360443 |
T |
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